Gene: AT5G62700

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G62700
  • Transcript Identifier AT5G62700.1
  • Gene Type Coding gene
  • Location Chr5 : 25184501-25186426 : positive

Gene Family Information

  • ID HOM05D000282
  • #Genes/#Species 1541/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G62700.1
  • symbol TUB3
  • uniprot Q9ASR0

Descriptions

  • Description tubulin beta chain 3
  • Computational description tubulin beta chain 3 (TUB3); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cold; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 2 (TAIR:AT5G62690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007010
IEA
GOA Databasecytoskeleton organization
GO:0007017
IEA
Gene Ontologymicrotubule-based process
GO:0007017
IEA
InterPromicrotubule-based process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005200
IEA
Gene Ontologystructural constituent of cytoskeleton
GO:0005200
IEA
InterProstructural constituent of cytoskeleton
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0003924
IEA
Gene OntologyGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003729
IDA
Gene OntologymRNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005874
IEA
GOA Databasemicrotubule
GO:0005874
IEA
InterPromicrotubule
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0005794
HDA
Gene OntologyGolgi apparatus3
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0009505
HDA
Gene Ontologyplant-type cell wall5
GO:0045298
TAS
Gene Ontologytubulin complex6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
IPR008280 Tubulin/FtsZ, C-terminal
IPR003008 Tubulin/FtsZ, GTPase domain
IPR000217 Tubulin
IPR023123 Tubulin, C-terminal
IPR036525 Tubulin/FtsZ, GTPase domain superfamily
IPR002453 Beta tubulin
IPR037103 Tubulin/FtsZ-like, C-terminal domain
Mapman id Description
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin