Gene: AT4G20890

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G20890
  • Transcript Identifier AT4G20890.1
  • Gene Type Coding gene
  • Location Chr4 : 11182218-11183840 : positive

Gene Family Information

  • ID HOM05D000282
  • #Genes/#Species 1541/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G20890.1
  • symbol TUB9
  • uniprot P29517

Descriptions

  • Description tubulin beta-9 chain
  • Computational description tubulin beta-9 chain (TUB9); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: tubulin complex, chloroplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 4 (TAIR:AT5G44340.1); Has 23670 Blast hits to 23574 proteins in 4893 species: Archae - 39; Bacteria - 42; Metazoa - 4465; Fungi - 14215; Plants - 1550; Viruses - 0; Other Eukaryotes - 3359 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046686
IEP
GOA Databaseresponse to cadmium ion
GO:0007017
IEA
GOA Databasemicrotubule-based process
GO:0007017
IEA
InterPromicrotubule-based process
GO:0000278
IBA
Gene Ontologymitotic cell cycle1
GO:0000226
IBA
Gene Ontologymicrotubule cytoskeleton organization1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IBA
Gene OntologyGTP binding1
GO:0005525
IEA
InterProGTP binding
GO:0005200
IEA
GOA Databasestructural constituent of cytoskeleton
GO:0005200
IBA
Gene Ontologystructural constituent of cytoskeleton1
GO:0005200
IEA
InterProstructural constituent of cytoskeleton
GO:0003924
IEA
Gene OntologyGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0003729
IDA, HDA
Gene OntologymRNA binding3 4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM, IBA
Gene Ontologycytoplasm1
GO:0005794
IDA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus5
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane6
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast7
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma8
GO:0005874
IEA
GOA Databasemicrotubule
GO:0005874
IBA
Gene Ontologymicrotubule1
GO:0005874
IEA
InterPromicrotubule
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0005829
HDA
Gene Ontologycytosol9
GO:0045298
ISS
Gene Ontologytubulin complex10
GO:0000325
HDA
Gene Ontologyplant-type vacuole11

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
IPR000217 Tubulin
IPR023123 Tubulin, C-terminal
IPR002453 Beta tubulin
IPR008280 Tubulin/FtsZ, C-terminal
IPR003008 Tubulin/FtsZ, GTPase domain
IPR037103 Tubulin/FtsZ-like, C-terminal domain
IPR036525 Tubulin/FtsZ, GTPase domain superfamily
Mapman id Description
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin