Gene: AT1G20010

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G20010
  • Transcript Identifier AT1G20010.1
  • Gene Type Coding gene
  • Location Chr1 : 6938033-6940481 : negative

Gene Family Information

  • ID HOM05D000282
  • #Genes/#Species 1541/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G20010.1
  • symbol TUB5
  • uniprot P29513

Descriptions

  • Description tubulin beta-5 chain
  • Computational description tubulin beta-5 chain (TUB5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process; LOCATED IN: tubulin complex, cell wall, plasma membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-1 chain (TAIR:AT1G75780.1); Has 23676 Blast hits to 23579 proteins in 4895 species: Archae - 37; Bacteria - 47; Metazoa - 4468; Fungi - 14216; Plants - 1551; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000226
IBA
Gene Ontologymicrotubule cytoskeleton organization1
GO:0007017
IEA
GOA Databasemicrotubule-based process
GO:0007017
ISS
Gene Ontologymicrotubule-based process2
GO:0007017
IEA
InterPromicrotubule-based process
GO:0000278
IBA
Gene Ontologymitotic cell cycle1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IBA
Gene OntologyGTP binding1
GO:0005525
IEA
InterProGTP binding
GO:0005200
IEA
GOA Databasestructural constituent of cytoskeleton
GO:0005200
ISS, IBA
Gene Ontologystructural constituent of cytoskeleton1 2
GO:0005200
IEA
InterProstructural constituent of cytoskeleton
GO:0003924
IEA
Gene OntologyGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0003729
IDA
Gene OntologymRNA binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM, IBA
Gene Ontologycytoplasm1
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0005618
IDA
GOA Databasecell wall
GO:0005774
IDA
GOA Databasevacuolar membrane
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma5
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane6
GO:0005874
IEA
GOA Databasemicrotubule
GO:0005874
IBA
Gene Ontologymicrotubule1
GO:0005874
IEA
InterPromicrotubule
GO:0045298
ISS
Gene Ontologytubulin complex2
GO:0009505
HDA
Gene Ontologyplant-type cell wall7
GO:0000325
HDA
Gene Ontologyplant-type vacuole8
GO:0005829
HDA
Gene Ontologycytosol9
GO:0005634
HDA
Gene Ontologynucleus10

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR023123 Tubulin, C-terminal
IPR036525 Tubulin/FtsZ, GTPase domain superfamily
IPR037103 Tubulin/FtsZ-like, C-terminal domain
IPR002453 Beta tubulin
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
IPR000217 Tubulin
IPR008280 Tubulin/FtsZ, C-terminal
IPR003008 Tubulin/FtsZ, GTPase domain
Mapman id Description
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin