Gene: AT5G12250

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G12250
  • Transcript Identifier AT5G12250.1
  • Gene Type Coding gene
  • Location Chr5 : 3961317-3962971 : negative

Gene Family Information

  • ID HOM05D000282
  • #Genes/#Species 1541/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G12250.1
  • symbol TUB6
  • uniprot P29514

Descriptions

  • Description beta-6 tubulin
  • Computational description beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007017
IEA
GOA Databasemicrotubule-based process
GO:0007017
ISS
Gene Ontologymicrotubule-based process1
GO:0007017
IEA
InterPromicrotubule-based process
GO:0000226
IBA
Gene Ontologymicrotubule cytoskeleton organization2
GO:0000278
IBA
Gene Ontologymitotic cell cycle2
GO:0009409
IEP
Gene Ontologyresponse to cold3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IBA
Gene OntologyGTP binding2
GO:0005525
IEA
InterProGTP binding
GO:0005200
IEA
GOA Databasestructural constituent of cytoskeleton
GO:0005200
ISS, IBA
Gene Ontologystructural constituent of cytoskeleton1 2
GO:0005200
IEA
InterProstructural constituent of cytoskeleton
GO:0003924
IEA
Gene OntologyGTPase activity
GO:0003924
IEA
InterProGTPase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0003729
IDA
Gene OntologymRNA binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005874
IEA
GOA Databasemicrotubule
GO:0005874
IBA
Gene Ontologymicrotubule2
GO:0005874
IEA
InterPromicrotubule
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM, IBA
Gene Ontologycytoplasm2
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005856
IEA
GOA Databasecytoskeleton
GO:0009536
HDA
Gene Ontologyplastid5
GO:0015630
ISS
Gene Ontologymicrotubule cytoskeleton1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000217 Tubulin
IPR037103 Tubulin/FtsZ-like, C-terminal domain
IPR003008 Tubulin/FtsZ, GTPase domain
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
IPR008280 Tubulin/FtsZ, C-terminal
IPR002453 Beta tubulin
IPR036525 Tubulin/FtsZ, GTPase domain superfamily
IPR023123 Tubulin, C-terminal
Mapman id Description
20.1.1.2 Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin