Gene: Pp3c15_4150

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c15_4150
  • Transcript Identifier Pp3c15_4150V3.2
  • Gene Type Coding gene
  • Location Chr15 : 2672814-2684806 : negative

Gene Family Information

  • ID HOM05D000228
  • #Genes/#Species 1809/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c15_4150V3.2
  • pacid 32926949
  • alias Pp1s83_67V6
  • alias Phpat.015G015400
  • uniprot A0A2K1JBT9

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT2G40030
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT2G40030
GO:0035194
ISO
PLAZA Integrative Orthologypost-transcriptional gene silencing by RNA AT2G40030
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT2G40030
GO:0006351
IEA
GOA Databasetranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G40030
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003899
IBA
IEA
GOA DatabaseDNA-directed 5'-3' RNA polymerase activity
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016779
IEA
GOA Databasenucleotidyltransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G40030
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G40030
GO:0030880
ISO
PLAZA Integrative OrthologyRNA polymerase complex AT2G40030
GO:0000418
ISO
PLAZA Integrative OrthologyRNA polymerase IV complex AT2G40030
GO:0000419
ISO
PLAZA Integrative OrthologyRNA polymerase V complex AT2G40030
GO:0016604
ISO
PLAZA Integrative Orthologynuclear body AT2G40030
GO:0005666
IBA
GOA DatabaseRNA polymerase III complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000722 RNA polymerase, alpha subunit
IPR007081 RNA polymerase Rpb1, domain 5
IPR007080 RNA polymerase Rpb1, domain 1
IPR042102 RNA polymerase Rpb1, domain 3 superfamily
IPR007066 RNA polymerase Rpb1, domain 3
IPR044893 RNA polymerase Rpb1, clamp domain superfamily
IPR006592 RNA polymerase, N-terminal
IPR007083 RNA polymerase Rpb1, domain 4
IPR038120 RNA polymerase Rpb1, funnel domain superfamily
Mapman id Description
15.1.5.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol V catalytic components.subunit 1