Gene: Pp3c10_9720
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c10_9720
- Transcript Identifier Pp3c10_9720V3.1
- Gene Type Coding gene
- Location Chr10 : 6473714-6484757 : positive
Gene Family Information
- ID HOM05D017924
- #Genes/#Species 7/6
- Phylogenetic origin
- ID ORTHO05D019596
- #Genes/#Species 7/6
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- name Pp3c10_9720V3.1
- pacid 32902182
- uniprot A0A2K1JYE2
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006508 | IEA | GOA Database | proteolysis | |
| GO:0000289 | IBA IEA | GOA Database | nuclear-transcribed mRNA poly(A) tail shortening | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0000288 | IEA | GOA Database | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | |
| GO:0090503 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, exonucleolytic | |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008233 | IEA | GOA Database | peptidase activity | |
| GO:0008234 | IEA | GOA Database | cysteine-type peptidase activity | |
| GO:0004518 | IEA | GOA Database | nuclease activity | |
| GO:0004527 | IEA | GOA Database | exonuclease activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0004535 | IEA | GOA Database | poly(A)-specific ribonuclease activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031251 | IBA IEA | GOA Database | PAN complex | |
| GO:0000932 | IBA | GOA Database | P-body | |
| GO:0005737 | IEA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR028881 | PAN2 domain |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR038765 | Papain-like cysteine peptidase superfamily |
| IPR013520 | Exonuclease, RNase T/DNA polymerase III |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR036397 | Ribonuclease H superfamily |
| Mapman id | Description |
|---|---|
| 35.2 | not assigned.not annotate |