Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_9720 Physcomitrium patens HOM05D017924 ORTHO05D019596 0.0e+00 2430.6 1211 100.0
Pp3c10_9726 Physcomitrium patens HOM05D017924 ORTHO05D019596 0.0e+00 2430.6 1211 100.0
AagrBONN_evm.TU.Sc2ySwM_368.448 Anthoceros agrestis HOM05D017924 ORTHO05D019596 0.0e+00 1385.9 1203 59.9
CBR_g49959 Chara braunii HOM05D017924 ORTHO05D019596 0.0e+00 1213.4 1350 51.0
PRCOL_00004881 Prasinoderma coloniale HOM05D017924 ORTHO05D019596 4.2e-197 693.0 1277 37.0
Cre06.g304550 Chlamydomonas reinhardtii HOM05D017924 ORTHO05D019596 7.1e-128 463.0 1639 26.8
MCO01G511 Micromonas commoda HOM05D017924 ORTHO05D019596 2.0e-61 242.3 197 66.0
Peaxi162Scf00000g02817 Petunia axillaris HOM05D001511 ORTHO05D009027 8.3e-12 77.4 213 30.5
Solyc12g014060.2 Solanum lycopersicum HOM05D001511 ORTHO05D009027 7.1e-11 74.3 213 31.9
CAN.G329.11 Capsicum annuum HOM05D001511 ORTHO05D009027 2.1e-10 72.8 160 35.0
Migut.M00764 Erythranthe guttata HOM05D001511 ORTHO05D009027 2.7e-10 72.4 147 36.1
HPP92_024582 Vanilla planifolia HOM05D001511 ORTHO05D009027 2.7e-10 72.4 128 36.7
Hma1.2p1_0416F.1_g148520 Hydrangea macrophylla HOM05D001511 ORTHO05D009027 3.5e-10 72.0 148 35.1
PGSC0003DMG400015373 Solanum tuberosum HOM05D001511 ORTHO05D009027 3.5e-10 72.0 213 31.5
Sopen12g005830 Solanum pennellii HOM05D001511 ORTHO05D009027 4.6e-10 71.6 213 31.5
AT3G15080 Arabidopsis thaliana HOM05D001511 ORTHO05D009027 1.0e-09 70.5 155 34.2
Nitab4.5_0005522g0010 Nicotiana tabacum HOM05D001511 ORTHO05D009027 1.0e-09 70.5 147 35.4
CSS0041260 Camellia sinensis var. sinensis HOM05D001511 ORTHO05D009027 1.3e-09 70.1 148 34.5
ClCG11G017730 Citrullus lanatus HOM05D001511 ORTHO05D009027 1.3e-09 70.1 191 28.8
MCO07G497 Micromonas commoda HOM05D001511 ORTHO05D009027 1.3e-09 70.1 192 32.8
Nn1g06364 Nelumbo nucifera HOM05D001511 ORTHO05D009027 1.3e-09 70.1 147 36.1
PGR031G1542 Punica granatum HOM05D001511 ORTHO05D009027 1.3e-09 70.1 178 32.0
Nitab4.5_0000332g0210 Nicotiana tabacum HOM05D001511 ORTHO05D009027 1.7e-09 69.7 147 35.4
Sc15g0002630 Simmondsia chinensis HOM05D001511 ORTHO05D009027 2.3e-09 69.3 147 34.7
CsaV3_4G033350 Cucumis sativus L. HOM05D001511 ORTHO05D009027 5.1e-09 68.2 147 33.3
Duzib213G0763 Durio zibethinus HOM05D001511 ORTHO05D009027 6.6e-09 67.8 147 34.0
MELO3C025620.2 Cucumis melo HOM05D001511 ORTHO05D009027 8.6e-09 67.4 147 33.3
Sed0012127 Sechium edule HOM05D001511 ORTHO05D009027 8.6e-09 67.4 147 32.7
THA.LOC104810451 Tarenaya hassleriana HOM05D001511 ORTHO05D009027 8.6e-09 67.4 191 28.8
Dinv20219 Davidia involucrata HOM05D001511 ORTHO05D009027 1.1e-08 67.0 147 35.4
Gorai.013G172100 Gossypium raimondii HOM05D001511 ORTHO05D009027 1.1e-08 67.0 180 30.6
Mapoly0007s0212 Marchantia polymorpha HOM05D001511 ORTHO05D009027 1.5e-08 66.6 151 35.1
TWI39G0540 Tripterygium wilfordii HOM05D001511 ORTHO05D009027 2.5e-08 65.9 147 34.0
Psat5g241280 Pisum sativum HOM05D001511 ORTHO05D009027 3.3e-08 65.5 193 28.5
arahy.Tifrunner.gnm1.ann1.JQB868 Arachis hypogaea HOM05D001511 ORTHO05D009027 4.3e-08 65.1 169 32.0
arahy.Tifrunner.gnm1.ann1.K1U0CI Arachis hypogaea HOM05D001511 ORTHO05D009027 4.3e-08 65.1 169 32.0
Cc05_g11540 Coffea canephora HOM05D001511 ORTHO05D009027 4.3e-08 65.1 147 33.3
Oeu035014.1 Olea europaea HOM05D001511 ORTHO05D009027 5.6e-08 64.7 147 33.3
MBI06_g34194_MAGBIO Magnolia biondii HOM05D001511 ORTHO05D009027 7.3e-08 64.3 148 32.4
Phvul.005G068900 Phaseolus vulgaris HOM05D001511 ORTHO05D009027 7.3e-08 64.3 199 28.1
SHI27559 Sapria himalayana HOM05D001511 ORTHO05D009027 7.3e-08 64.3 153 27.5
Glyma.12G227500 Glycine max HOM05D001511 ORTHO05D009027 9.5e-08 63.9 147 34.0
Rhsim04G0023400 Rhododendron simsii HOM05D001511 ORTHO05D009027 1.2e-07 63.5 212 27.4
RcHm_v2.0_Chr5g0031901 Rosa chinensis HOM05D001511 ORTHO05D009027 1.2e-07 63.5 149 31.5
TPR.G29647 Trifolium pratense HOM05D001511 ORTHO05D009027 1.2e-07 63.5 147 33.3
CBR_g37123 Chara braunii HOM05D001511 ORTHO05D009027 2.1e-07 62.8 214 31.8
FvH4_3g19101 Fragaria vesca HOM05D001511 ORTHO05D009027 2.1e-07 62.8 180 28.3
TWI34G0076 Tripterygium wilfordii HOM05D005364 ORTHO05D006554 2.1e-07 62.8 146 34.9
PRCOL_00002441 Prasinoderma coloniale HOM05D005364 ORTHO05D006554 2.8e-07 62.4 144 32.6
MSTRG.14941 Avicennia marina HOM05D001511 ORTHO05D009027 3.6e-07 62.0 259 26.6
SMO361G0049 Selaginella moellendorffii HOM05D001511 ORTHO05D009027 3.6e-07 62.0 150 30.7
SEGI_16806 Sequoiadendron giganteum HOM05D001511 ORTHO05D002368 3.6e-07 62.0 157 29.3
SEGI_30992 Sequoiadendron giganteum HOM05D001511 ORTHO05D002368 3.6e-07 62.0 157 29.3
AT5G25800 Arabidopsis thaliana HOM05D005364 ORTHO05D006554 4.7e-07 61.6 250 30.4
Lj3g0024963 Lotus japonicus HOM05D001511 ORTHO05D009027 4.7e-07 61.6 147 32.0
CAN.G657.4 Capsicum annuum HOM05D005364 ORTHO05D006554 6.2e-07 61.2 237 28.7
Ciclev10008845m.g Citrus clementina HOM05D001511 ORTHO05D009027 6.2e-07 61.2 147 33.3
Nn5g28547 Nelumbo nucifera HOM05D005364 ORTHO05D006554 6.2e-07 61.2 180 32.8
Ah.05g169340 Amaranthus hybridus HOM05D005364 ORTHO05D006554 8.1e-07 60.8 144 32.6
Carub.0006s2357 Capsella rubella HOM05D005364 ORTHO05D006554 8.1e-07 60.8 193 30.1
Glyma.13G272800 Glycine max HOM05D001511 ORTHO05D009027 8.1e-07 60.8 148 31.8
SMO361G0206 Selaginella moellendorffii HOM05D001511 ORTHO05D009027 8.1e-07 60.8 150 30.7
Ca_12657_v3 Cicer arietinum L. HOM05D005364 ORTHO05D003291 1.1e-06 60.5 130 33.8
FvH4_2g15020 Fragaria vesca HOM05D005364 ORTHO05D006554 1.1e-06 60.5 278 28.1
Sc15g0007420 Simmondsia chinensis HOM05D005364 ORTHO05D006554 1.1e-06 60.5 144 34.0
Sc15g0007440 Simmondsia chinensis HOM05D001552 ORTHO05D003294 1.1e-06 60.5 144 34.0
vmacro09512 Vaccinium macrocarpon HOM05D001511 ORTHO05D009027 1.1e-06 60.5 148 31.1
Aa31LG11G4810 Aethionema arabicum HOM05D005364 ORTHO05D006554 1.4e-06 60.1 177 31.6
AUR62026796 Chenopodium quinoa HOM05D005364 ORTHO05D006554 1.4e-06 60.1 144 33.3
DCAR_010238 Daucus carota HOM05D005364 ORTHO05D006554 1.4e-06 60.1 132 34.1
FAN15G1836 Fragaria x ananassa HOM05D005364 ORTHO05D006554 1.8e-06 59.7 180 30.6
FAN27G1309 Fragaria x ananassa HOM05D005364 ORTHO05D006554 1.8e-06 59.7 180 30.6
Pp3c9_5320 Physcomitrium patens HOM05D001511 ORTHO05D009027 1.8e-06 59.7 149 33.6
AL6G37660 Arabidopsis lyrata HOM05D005364 ORTHO05D006554 2.4e-06 59.3 193 31.1
CBR_g39514 Chara braunii HOM05D005364 ORTHO05D006554 2.4e-06 59.3 217 29.0
FAN24G1520 Fragaria x ananassa HOM05D005364 ORTHO05D006554 3.1e-06 58.9 230 28.3
Solyc04g064560.4 Solanum lycopersicum HOM05D005364 ORTHO05D006554 3.1e-06 58.9 175 30.9
Sopen04g026510 Solanum pennellii HOM05D005364 ORTHO05D006554 3.1e-06 58.9 175 30.9
BcaNung03925 Brassica carinata HOM05D005364 ORTHO05D006554 4.0e-06 58.5 250 26.0
BolC7t44743H Brassica oleracea HOM05D005364 ORTHO05D006554 4.0e-06 58.5 250 26.0
Lj4C689G10 Lonicera japonica HOM05D005364 ORTHO05D006554 4.0e-06 58.5 274 29.6
Medtr1g029410 Medicago truncatula HOM05D005364 ORTHO05D006554 5.2e-06 58.2 130 32.3
CARHR187620 Cardamine hirsuta HOM05D005364 ORTHO05D006554 6.8e-06 57.8 193 29.5
Pp3c1_5030 Physcomitrium patens HOM05D005364 ORTHO05D006554 6.8e-06 57.8 147 32.0
HanXRQChr15g0484621 Helianthus annuus HOM05D005364 ORTHO05D006554 8.9e-06 57.4 187 31.0
SGA_v2.0_scaffold73G24217 Striga asiatica HOM05D001511 ORTHO05D009027 8.9e-06 57.4 170 30.0


User provided reference genes

Program Settings