Gene: AT2G36170

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G36170
  • Transcript Identifier AT2G36170.1
  • Gene Type Coding gene
  • Location Chr2 : 15172153-15173046 : positive

Gene Family Information

  • ID HOM05D000218
  • #Genes/#Species 1867/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G36170.1
  • Alias RPL40A,60S ribosomal protein L40 A,UBQ2,ubiquitin extension protein 2
  • uniprot B9DHA6

Descriptions

  • Description 60S ribosomal protein L40-1
  • Computational description Ubiquitin supergroup;Ribosomal protein L40e; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L40e (InterPro:IPR001975), Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin extension protein 1 (TAIR:AT3G52590.1); Has 12454 Blast hits to 7164 proteins in 726 species: Archae - 0; Bacteria - 25; Metazoa - 5499; Fungi - 1428; Plants - 3086; Viruses - 174; Other Eukaryotes - 2242 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0016567
IBA
Gene Ontologyprotein ubiquitination1
GO:0019941
IBA
Gene Ontologymodification-dependent protein catabolic process1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0005515
IEA
InterProprotein binding
GO:0031386
IBA
Gene Ontologyprotein tag1
GO:0031625
IBA
Gene Ontologyubiquitin protein ligase binding1
GO:0003729
IDA
Gene OntologymRNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus3
GO:0022625
IDA
GOA Databasecytosolic large ribosomal subunit
GO:0022625
HDA
Gene Ontologycytosolic large ribosomal subunit4
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IBA
Gene Ontologynucleus1
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038587 Ribosomal protein L40e superfamily
IPR000626 Ubiquitin-like domain
IPR001975 Ribosomal protein L40e
IPR011332 Zinc-binding ribosomal protein
IPR019956 Ubiquitin domain
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
17.1.2.1.43 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL40