Gene: AT1G31340

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G31340
  • Transcript Identifier AT1G31340.1
  • Gene Type Coding gene
  • Location Chr1 : 11218076-11219417 : negative

Gene Family Information

  • ID HOM05D000218
  • #Genes/#Species 1867/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G31340.1
  • symbol RUB1
  • Alias ATRUB1,ARABIDOPSIS THALIANA RELATED TO UBIQUITIN 1,NEDD8
  • uniprot Q9SHE7

Descriptions

  • Description related to ubiquitin 1
  • Computational description related to ubiquitin 1 (RUB1); INVOLVED IN: protein modification process, response to auxin stimulus, protein neddylation, ethylene biosynthetic process, embryo development; LOCATED IN: plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 7 (TAIR:AT2G35635.1); Has 16064 Blast hits to 7349 proteins in 721 species: Archae - 0; Bacteria - 36; Metazoa - 7330; Fungi - 1879; Plants - 3570; Viruses - 331; Other Eukaryotes - 2918 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019941
IBA
Gene Ontologymodification-dependent protein catabolic process1
GO:0045116
TAS
Gene Ontologyprotein neddylation2
GO:0016567
IBA
Gene Ontologyprotein ubiquitination1
GO:0009733
TAS
Gene Ontologyresponse to auxin3
GO:0009793
IGI
Gene Ontologyembryo development ending in seed dormancy4
GO:0009693
IMP
Gene Ontologyethylene biosynthetic process4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0005515
IEA
InterProprotein binding
GO:0031625
IBA
Gene Ontologyubiquitin protein ligase binding1
GO:0031386
IBA
Gene Ontologyprotein tag1
GO:0003729
IDA
Gene OntologymRNA binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
Gene Ontologycytosol7
GO:0005886
IDA
GOA Databaseplasma membrane
GO:0005886
HDA
Gene Ontologyplasma membrane8
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
HDA
IBA
Gene Ontologynucleus1 9

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038738 Nedd8-like ubiquitin
IPR029071 Ubiquitin-like domain superfamily
IPR000626 Ubiquitin-like domain
IPR019956 Ubiquitin domain
Mapman id Description
19.2.2.3.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.RUB/NEDD8 conjugation (neddylation).ubiquitin-fold protein (RUB)