Gene: AT2G47110

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G47110
  • Transcript Identifier AT2G47110.2
  • Gene Type Coding gene
  • Location Chr2 : 19344701-19345174 : positive

Gene Family Information

  • ID HOM05D000218
  • #Genes/#Species 1867/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G47110.2
  • symbol UBQ6
  • Alias UBI6,UBIQUITIN EXTENSION PROTEIN 6
  • uniprot P59232

Descriptions

  • Description ubiquitin 6
  • Computational description ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1); Has 12701 Blast hits to 7389 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5539; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
  • Computational description ubiquitin 6 (UBQ6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosolic small ribosomal subunit, intracellular; EXPRESSED IN: whole plant, male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 5 (TAIR:AT3G62250.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0019941
IBA
Gene Ontologymodification-dependent protein catabolic process1
GO:0016567
IBA
Gene Ontologyprotein ubiquitination1
GO:0006511
ISS
Gene Ontologyubiquitin-dependent protein catabolic process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IDA
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0005515
IEA
InterProprotein binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0031625
IBA
Gene Ontologyubiquitin protein ligase binding1
GO:0031386
IBA
Gene Ontologyprotein tag1
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IBA
Gene Ontologynucleus1
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
IEA
InterProribosome
GO:0005794
IDA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus4
GO:0022627
IDA
GOA Databasecytosolic small ribosomal subunit
GO:0022627
HDA
Gene Ontologycytosolic small ribosomal subunit5
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005622
TAS
Gene Ontologyintracellular anatomical structure
GO:0005829
HDA
Gene Ontologycytosol6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000626 Ubiquitin-like domain
IPR002906 Ribosomal protein S27a
IPR019956 Ubiquitin domain
IPR011332 Zinc-binding ribosomal protein
IPR038582 S27a-like superfamily
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
17.1.3.1.29 Protein biosynthesis.ribosome biogenesis.small ribosomal subunit (SSU).SSU proteome.component RPS27a