Gene: Lj2g0006542

General Information

Structural Information

  • Species Lotus japonicus
  • Gene Identifier Lj2g0006542
  • Transcript Identifier Lj2g0006542.1
  • Gene Type Coding gene
  • Location chr2 : 27461002-27466578 : positive

Gene Family Information

  • ID HOM05D000234
  • #Genes/#Species 1784/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lj2g0006542.Lj1.0v1
  • pacid 44931070

Descriptions

  • Description PTHR22891//PTHR22891:SF34 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C // SUBFAMILY NOT NAMED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048830
ISO
PLAZA Integrative Orthologyadventitious root development AT1G48410
GO:0007143
ISO
PLAZA Integrative Orthologyfemale meiotic nuclear division Os03g0800200
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis Os03g0800200
GO:0007140
ISO
PLAZA Integrative Orthologymale meiotic nuclear division Os03g0800200
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT1G48410
GO:0061866
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-S10 phosphorylation Os03g0800200
GO:0009616
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immune response AT1G48410
GO:0035195
ISO
PLAZA Integrative Orthologygene silencing by miRNA AT1G48410
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT1G48410
GO:0030154
ISO
PLAZA Integrative Orthologycell differentiation AT1G48410
GO:0010589
ISO
PLAZA Integrative Orthologyleaf proximal/distal pattern formation AT1G48410
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA Solyc03g098280.4
GO:0033169
ISO
PLAZA Integrative Orthologyhistone H3-K9 demethylation Os03g0800200
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT1G48410
GO:0010305
ISO
PLAZA Integrative Orthologyleaf vascular tissue pattern formation AT1G48410
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G48410
GO:1900111
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylation Os03g0800200
GO:1903343
ISO
PLAZA Integrative Orthologypositive regulation of meiotic DNA double-strand break formation Os03g0800200
GO:0009850
ISO
PLAZA Integrative Orthologyauxin metabolic process AT1G48410
GO:0009955
ISO
PLAZA Integrative Orthologyadaxial/abaxial pattern specification AT1G48410
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT1G48410
GO:0010218
ISO
PLAZA Integrative Orthologyresponse to far red light AT1G48410
GO:2000616
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-K9 acetylation Os03g0800200
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis Os03g0800200
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT1G48410

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035197
ISO
PLAZA Integrative OrthologysiRNA binding AT1G48410
GO:0004521
ISO
PLAZA Integrative Orthologyendoribonuclease activity AT1G48410
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G48410
GO:0035198
ISO
PLAZA Integrative OrthologymiRNA binding AT1G48410

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G48410
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G48410
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus Os03g0800200
GO:0005731
ISO
PLAZA Integrative Orthologynucleolus organizer region Os03g0800200
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G48410

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003165 Piwi domain
IPR032472 Argonaute linker 2 domain
IPR036085 PAZ domain superfamily
IPR012337 Ribonuclease H-like superfamily
IPR014811 Argonaute, linker 1 domain
IPR024357 Argonaut, glycine-rich domain
IPR003100 PAZ domain
IPR036397 Ribonuclease H superfamily
IPR032473 Protein argonaute, Mid domain
IPR032474 Protein argonaute, N-terminal
Mapman id Description
16.9.2.7 RNA processing.mRNA silencing.miRNA pathway.miRNA recruiting factor (AGO1/AGO10)