Gene: Solyc03g098280.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g098280.4
  • Transcript Identifier Solyc03g098280.4.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 55137804-55144077 : positive

Gene Family Information

  • ID HOM05D000234
  • #Genes/#Species 1784/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g098280.4.1
  • uniprot A0A3Q7FQD8
  • gene_id Solyc03g098280

Descriptions

  • Description Argonaute 1b
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031047
IEA
GOA Databasegene silencing by RNA
GO:0031047
IDA
Gene Ontologygene silencing by RNA1
GO:0007143
ISO
PLAZA Integrative Orthologyfemale meiotic nuclear division Os03g0800200
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis Os03g0800200
GO:0007140
ISO
PLAZA Integrative Orthologymale meiotic nuclear division Os03g0800200
GO:1900111
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylation Os03g0800200
GO:1903343
ISO
PLAZA Integrative Orthologypositive regulation of meiotic DNA double-strand break formation Os03g0800200
GO:2000616
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-K9 acetylation Os03g0800200
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis Os03g0800200
GO:0033169
ISO
PLAZA Integrative Orthologyhistone H3-K9 demethylation Os03g0800200
GO:0061866
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-S10 phosphorylation Os03g0800200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus Os03g0800200
GO:0005731
ISO
PLAZA Integrative Orthologynucleolus organizer region Os03g0800200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014811 Argonaute, linker 1 domain
IPR003165 Piwi domain
IPR032473 Protein argonaute, Mid domain
IPR032472 Argonaute linker 2 domain
IPR032474 Protein argonaute, N-terminal
IPR003100 PAZ domain
IPR012337 Ribonuclease H-like superfamily
IPR024357 Argonaut, glycine-rich domain
IPR036397 Ribonuclease H superfamily
IPR036085 PAZ domain superfamily
Mapman id Description
16.9.2.7 RNA processing.mRNA silencing.miRNA pathway.miRNA recruiting factor (AGO1/AGO10)