Gene: FAN14G4079

General Information

Structural Information

  • Species Fragaria x ananassa
  • Gene Identifier FAN14G4079
  • Transcript Identifier FAN14G4079.1
  • Gene Type Coding gene
  • Location Fvb6-1 : 23222123-23224573 : positive

Gene Family Information

  • ID HOM05D000218
  • #Genes/#Species 1867/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id maker-Fvb6-1-snap-gene-232.47.v1.0.a1
  • pacid 50522848

Descriptions

  • Description K02927//K08770 - large subunit ribosomal protein L40e (RP-L40e, RPL40) // ubiquitin C (UBC)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007568
ISO
PLAZA Integrative Orthologyaging AT4G05320
GO:0016567
ISO
PLAZA Integrative Orthologyprotein ubiquitination AT3G52590
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT5G03240
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT1G31340
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT5G20620
GO:0009751
ISO
PLAZA Integrative Orthologyresponse to salicylic acid AT4G05320
GO:0045116
ISO
PLAZA Integrative Orthologyprotein neddylation AT1G31340
GO:0006464
ISO
PLAZA Integrative Orthologycellular protein modification process AT4G05320
GO:0009693
ISO
PLAZA Integrative Orthologyethylene biosynthetic process AT1G31340
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G31340
GO:0006412
IEA
InterProtranslation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT2G36170
GO:0005515
IEA
InterProprotein binding
GO:0003735
IEA
InterProstructural constituent of ribosome

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G31340
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT3G09790
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT1G23410
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G31340
GO:0005622
ISO
PLAZA Integrative Orthologyintracellular anatomical structure AT3G09790
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G09790
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT5G37640
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G36170
GO:0022625
ISO
PLAZA Integrative Orthologycytosolic large ribosomal subunit AT2G36170
GO:0005794
ISO
PLAZA Integrative OrthologyGolgi apparatus AT2G47110
GO:0022627
ISO
PLAZA Integrative Orthologycytosolic small ribosomal subunit AT2G47110
GO:0005840
IEA
InterProribosome

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019956 Ubiquitin domain
IPR000626 Ubiquitin-like domain
IPR011332 Zinc-binding ribosomal protein
IPR001975 Ribosomal protein L40e
IPR038587 Ribosomal protein L40e superfamily
IPR029071 Ubiquitin-like domain superfamily
Mapman id Description
17.1.2.1.43 Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL40