Gene: AT5G60040
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G60040
- Transcript Identifier AT5G60040.1
- Gene Type Coding gene
- Location Chr5 : 24173590-24183269 : positive
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D001545
- #Genes/#Species 391/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G60040.1
- symbol NRPC1
- uniprot F4JXF9
Descriptions
- Description nuclear RNA polymerase C1
- Computational description nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1); Has 28475 Blast hits to 24538 proteins in 8142 species: Archae - 517; Bacteria - 7526; Metazoa - 2258; Fungi - 3135; Plants - 6544; Viruses - 257; Other Eukaryotes - 8238 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | Gene Ontology | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | Gene Ontology | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IBA IEA | Gene Ontology | DNA-directed 5'-3' RNA polymerase activity | 1 |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005666 | IBA | Gene Ontology | RNA polymerase III complex | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| IPR035697 | DNA-directed RNA polymerase III subunit RPC1, N-terminal |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR007066 | RNA polymerase Rpb1, domain 3 |
| IPR007080 | RNA polymerase Rpb1, domain 1 |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR035698 | DNA-directed RNA polymerase III subunit RPC1, C-terminal |
| IPR006592 | RNA polymerase, N-terminal |
| Mapman id | Description |
|---|---|
| 15.1.3.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 1 |