Gene: AT5G13980
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G13980
- Transcript Identifier AT5G13980.2
- Gene Type Coding gene
- Location Chr5 : 4508626-4514334 : positive
Gene Family Information
- ID HOM05D000877
- #Genes/#Species 679/99
- Phylogenetic origin
- ID ORTHO05D001509
- #Genes/#Species 395/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G13980.2
- uniprot Q8LPJ3
Descriptions
- Description Glycosyl hydrolase family 38 protein
- Computational description Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 1172 Blast hits to 1119 proteins in 194 species: Archae - 7; Bacteria - 147; Metazoa - 695; Fungi - 22; Plants - 164; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).
- Computational description Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | IEA | GOA Database | carbohydrate metabolic process | |
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
| GO:0006013 | IEA | Gene Ontology | mannose metabolic process | |
| GO:0006013 | IEA | InterPro | mannose metabolic process | |
| GO:0008152 | IEA | GOA Database | metabolic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030246 | IEA | Gene Ontology | carbohydrate binding | |
| GO:0030246 | IEA | InterPro | carbohydrate binding | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0004559 | IBA IEA | Gene Ontology | alpha-mannosidase activity | 1 |
| GO:0004559 | IEA | InterPro | alpha-mannosidase activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0016798 | IEA | GOA Database | hydrolase activity, acting on glycosyl bonds | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005773 | IDA | GOA Database | vacuole | |
| GO:0005773 | HDA | Gene Ontology | vacuole | 2 |
| GO:0048046 | IDA | GOA Database | apoplast | |
| GO:0048046 | HDA | Gene Ontology | apoplast | 3 |
| GO:0005774 | IDA | GOA Database | vacuolar membrane | |
| GO:0005774 | IBA | Gene Ontology | vacuolar membrane | 1 |
| GO:0005618 | IDA | GOA Database | cell wall | |
| GO:0005618 | HDA | Gene Ontology | cell wall | 4 |
| GO:0099503 | HDA | Gene Ontology | secretory vesicle | 5 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 6 |
| GO:0005576 | ISM | Gene Ontology | extracellular region |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000602 | Glycoside hydrolase family 38, N-terminal domain |
| IPR027291 | Glycoside hydrolase 38, N-terminal domain superfamily |
| IPR041147 | Glycosyl hydrolases family 38, C-terminal beta sandwich domain |
| IPR028995 | Glycoside hydrolase families 57/38, central domain superfamily |
| IPR015341 | Glycoside hydrolase family 38, central domain |
| IPR013780 | Glycosyl hydrolase, all-beta |
| IPR011013 | Galactose mutarotase-like domain superfamily |
| IPR011682 | Glycosyl hydrolase family 38, C-terminal |
| IPR037094 | Glycoside hydrolase family 38, central domain superfamily |
| IPR011330 | Glycoside hydrolase/deacetylase, beta/alpha-barrel |
| Mapman id | Description |
|---|---|
| 50.3.2 | Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase |