Gene: AT2G27900

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G27900
  • Transcript Identifier AT2G27900.2
  • Gene Type Coding gene
  • Location Chr2 : 11877654-11885238 : positive

Gene Family Information

  • ID HOM05D004020
  • #Genes/#Species 174/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G27900.2
  • uniprot Q8RXC2

Descriptions

  • Description coiled-coil protein
  • Computational description CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 316 Blast hits to 252 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
  • Computational description CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein sorting-associated protein 54 (InterPro:IPR019515); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042147
IEA
Gene Ontologyretrograde transport, endosome to Golgi
GO:0042147
IEA
InterProretrograde transport, endosome to Golgi
GO:0032456
IEA
GOA Databaseendocytic recycling
GO:0032456
IBA
Gene Ontologyendocytic recycling1
GO:0032456
IEA
InterProendocytic recycling

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding2
GO:0000149
IBA
Gene OntologySNARE binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:1990745
IEA
GOA DatabaseEARP complex
GO:1990745
IBA
Gene OntologyEARP complex1
GO:1990745
IEA
InterProEARP complex
GO:0005829
IEA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019514 Syndetin, C-terminal
IPR040047 Syndetin
IPR019515 Vacuolar protein sorting-associated protein 54, N-terminal
Mapman id Description
22.3.4.8.5 Vesicle trafficking.post-Golgi trafficking.vesicle tethering.GARP/EARP complexes.EARP-specific component Syndetin-like