Gene: AL4G20580

General Information

Structural Information

  • Species Arabidopsis lyrata
  • Gene Identifier AL4G20580
  • Transcript Identifier AL4G20580.t1
  • Gene Type Coding gene
  • Location scaffold_4 : 10787316-10792060 : negative

Gene Family Information

  • ID HOM05D000234
  • #Genes/#Species 1784/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id AL4G20580.v2.1
  • synonym 481584
  • synonym fgenesh2_kg.4__644__AT2G27040.1
  • pacid 35923495

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031048
ISO
PLAZA Integrative Orthologyheterochromatin assembly by small RNA AT2G27040
GO:0051567
ISO
PLAZA Integrative Orthologyhistone H3-K9 methylation AT2G27040
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT2G27040
GO:0019048
ISO
PLAZA Integrative Orthologymodulation by virus of host process AT2G27040
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT2G27040
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA Solyc01g096750.1
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT2G27040
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT2G27040
GO:0006342
ISO
PLAZA Integrative Orthologychromatin silencing AT2G27040
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT2G27040
GO:0070919
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in chromatin silencing by small RNA AT2G27040
GO:0010495
ISO
PLAZA Integrative Orthologylong-distance posttranscriptional gene silencing AT2G27040
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing AT2G27040

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004521
ISO
PLAZA Integrative Orthologyendoribonuclease activity AT2G27040
GO:0005515
IEA
InterProprotein binding
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT2G27040
GO:0035197
ISO
PLAZA Integrative OrthologysiRNA binding AT2G27040
GO:0035198
ISO
PLAZA Integrative OrthologymiRNA binding AT2G27040
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT2G27040
GO:0000791
ISO
PLAZA Integrative Orthologyeuchromatin AT2G27040
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT2G27040
GO:0015030
ISO
PLAZA Integrative OrthologyCajal body AT2G27040

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032474 Protein argonaute, N-terminal
IPR032472 Argonaute linker 2 domain
IPR003100 PAZ domain
IPR003165 Piwi domain
IPR014811 Argonaute, linker 1 domain
IPR036397 Ribonuclease H superfamily
IPR012337 Ribonuclease H-like superfamily
IPR032473 Protein argonaute, Mid domain
IPR036085 PAZ domain superfamily
Mapman id Description
12.5.1.13 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.siRNA-integrating factor (AGO)