Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen02g009530 Integrase-type DNA-binding superfamily protein | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Pathogenesis-related transcriptional factor/ERF, DNA-binding | BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein ., Protein BABY BOOM 1 (BnBBM1) - Brassica napus (Rape) Spenn-ch02 + View
Sopen07g007440 Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.essential for the developmental transition between the embryonic and vegetative phases in plants.Overexpression results in the formation of somatic embryos on cotyledons. | AINTEGUMENTA-like 5 (AIL5) | CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type , Pathogenesis-related transcriptional factor/ERF, DNA-binding | BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein Spenn-ch07 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G7670 LG-8 + View
Acer truncatum Atru.chr3.2583 chr3 - View
Actinidia chinensis Actinidia16307 Lachesis_group24 - View
Actinidia chinensis Actinidia06886 Lachesis_group13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L4Q0K2 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ETC6KF PTHR32467//PTHR32467:SF22 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1 arahy.Tifrunner.gnm1.Arahy.08 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L4W2C9 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 arahy.Tifrunner.gnm1.Arahy.18 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TN1J43 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT1G51190 Integrase-type DNA-binding superfamily protein Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. PLETHORA 2 (PLT2)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT3G20840.1)%3B Has 7787 Blast hits to 5250 proteins in 253 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 4%3B Fungi - 0%3B Plants - 7694%3B Viruses - 2%3B Other Eukaryotes - 79 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT3G20840 Integrase-type DNA-binding superfamily protein Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors. PLETHORA 1 (PLT1)%3B CONTAINS InterPro DOMAIN/s: DNA-binding%2C integrase-type (InterPro:IPR016177)%2C Pathogenesis-related transcriptional factor/ERF%2C DNA-binding (InterPro:IPR001471)%3B BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G51190.1)%3B Has 7378 Blast hits to 5365 proteins in 273 species: Archae - 0%3B Bacteria - 8%3B Metazoa - 48%3B Fungi - 6%3B Plants - 7088%3B Viruses - 2%3B Other Eukaryotes - 226 (source: NCBI BLink). Chr3 + View
Amborella trichopoda ATR0605G302 AmTr_v1.0_scaffold00022 + View
Brassica carinata BcaB07g33565 ChrB07 + View
Brassica napus C05p43220 C05 - View
Brassica napus A06p02610 A06 - View
Brassica oleracea BolC5t33052H C5 - View
Beta vulgaris EL10Ac4g10300 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Chr4_EL10_PGA_scaffold1 + View
Cicer arietinum L. Ca_01284_v3 Ca_LG1_v3 + View
Corylus avellana Haze_23086 Similar to PLT1: AP2-like ethylene-responsive transcription factor PLT1 (Arabidopsis thaliana OX%3D3702) 6 + View
Citrus clementina Ciclev10014809m.g scaffold_2 - View
Carya illinoinensis CiPaw.09G034000 PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1 Chr09 - View
Carya illinoinensis CiPaw.14G121100 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Chr14 - View
Citrullus lanatus ClCG02G023380 AP2-like ethylene-responsive transcription factor CG_Chr02 + View
Cucumis melo MELO3C014609.2 AP2-like ethylene-responsive transcription factor PLT1 chr05 - View
Carica papaya Cpa.g.sc84.82 supercontig_84 - View
Chenopodium quinoa AUR62000095 PLT2: AP2-like ethylene-responsive transcription factor PLT2 C_Quinoa_Scaffold_2088 - View
Chenopodium quinoa AUR62019268 PLT2: AP2-like ethylene-responsive transcription factor PLT2 C_Quinoa_Scaffold_3107 - View
Capsella rubella Carub.0003s2080 PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1 scaffold_3 + View
Cucumis sativus L. CsaV3_4G024120 AP2-like ethylene-responsive transcription factor chr4 - View
Davidia involucrata Dinv18098 GWHABJS00000015 - View
Davidia involucrata Dinv36284 GWHABJS00000007 + View
Durio zibethinus Duzib150G0389 NW_019167882.1 + View
Erigeron canadensis ECA233G1963 Conyza_canadensis_scaffold:1 - View
Eucalyptus grandis Eucgr.J00792 Chr10 + View
Erythranthe guttata Migut.D00575 scaffold_4 - View
Eutrema salsugineum Thhalv10011353m.g PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 scaffold_7 - View
Eutrema salsugineum Thhalv10020382m.g PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1 scaffold_13 - View
Fragaria x ananassa FAN25G1670 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Fvb3-1 + View
Fragaria x ananassa FAN11G2019 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Fvb3-4 + View
Fragaria x ananassa FAN16G2715 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Fvb3-3 - View
Fragaria x ananassa FAN21G4057 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Fvb3-2 - View
Fragaria vesca FvH4_3g43100 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Fvb3 - View
Gossypium hirsutum Gohir.D09G121750 PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1 D09 + View
Glycine max Glyma.11G131900 PTHR32467:SF22 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1 Gm11 + View
Glycine max Glyma.12G056300 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Gm12 + View
Gossypium raimondii Gorai.006G139300 Chr06 + View
Lupinus albus Lalb_Chr19g0138171 PTHR32467//PTHR32467:SF12 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Lalb_Chr19 + View
Lotus japonicus Lj3g0009796 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 chr3 + View
Lotus japonicus Lj3g0006458 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 chr3 + View
Lotus japonicus Lj1g0018891 KOG0702 - Predicted GTPase-activating protein chr1 - View
Lactuca sativa Lsat_1_v5_gn_6_48361 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Lsat_1_v8_lg_6 - View
Magnolia biondii MBI01_g39230_MAGBIO AED:0.34 Chr01 - View
Malus domestica MD11G1028800 Integrase-type DNA-binding superfamily protein Chr11 + View
Malus domestica MD14G1064900 Integrase-type DNA-binding superfamily protein Chr14 - View
Malus domestica MD03G1023900 Integrase-type DNA-binding superfamily protein Chr03 + View
Manihot esculenta Manes.14G000900 Chromosome14 + View
Manihot esculenta Manes.06G167000 Chromosome06 - View
Medicago truncatula Medtr2g098180 AP2-like ethylene-responsive transcription factor chr2 - View
Medicago truncatula Medtr4g065370 AP2-like ethylene-responsive transcription factor chr4 - View
Nelumbo nucifera Nn2g15405 chr2 + View
Nelumbo nucifera Nn7g36182 chr7 + View
Punica granatum PGR102G1415 NC_045129.1 + View
Punica granatum PGR004G2659 NC_045131.1 - View
Prunus persica Prupe.6G023000 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Pp06 + View
Prunus persica Prupe.7G069100 PF00847 - AP2 domain (AP2) Pp07 + View
Papaver somniferum PSO384G1268 NC_039368.1 - View
Populus trichocarpa Potri.003G205700 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Chr03 - View
Populus trichocarpa Potri.001G018400 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Chr01 + View
Phaseolus vulgaris Phvul.011G058000 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 Chr11 + View
Phaseolus vulgaris Phvul.007G256200 Chr07 - View
Quercus lobata QL01p005330 1 + View
Rosa chinensis RcHm_v2.0_Chr5g0077201 RcHm_v2.0_Chr5 - View
Rhododendron simsii Rhsim13G0224200 chr13 + View
Striga asiatica SGA_v2.0_scaffold247G44845 scaffold247 - View
Salix brachista Sabra03G0151900 GWHAAZH00000003 - View
Salix brachista Sabra01G0013000 GWHAAZH00000001 + View
Sechium edule Sed0025715 LG05 - View
Solanum lycopersicum Solyc11g061750.2 AP2-like ethylene-responsive transcription factor PLT1 (AHRD V3.3 *** A0A2G2VMY9_CAPBA) SL4.0ch11 + View
Schrenkiella parvula Sp3g18860 PTHR32467//PTHR32467:SF22 - FAMILY NOT NAMED // AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT1 ch3-1 + View
Schrenkiella parvula Sp1g37920 PTHR32467:SF12 - AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 ch1-2 + View
Solanum tuberosum PGSC0003DMG400013587 AP2 domain-containing transcription factor ST4.03ch11 + View
Selenicereus undatus Hund07536 Scaffold_33676 + View
Trochodendron aralioides TAR623G1723 group7 - View
Theobroma cacao Thecc.09G227300 AP2 domain-containing transcription factor Chromosome_9 - View
Theobroma cacao Thecc.05G164800 Integrase-type DNA-binding superfamily protein Chromosome_5 + View
Tarenaya hassleriana THA.LOC104817898 AP2-like ethylene-responsive transcription factor PLT1 NW_010966021.1 + View
Trifolium pratense TPR.G6820 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI34G0104 NC_052235.1 + View
Tripterygium wilfordii TWI75G1516 NC_052253.1 - View
Vigna mungo VMungo0720G2724 CM024071.1 + View
Vigna mungo VMungo1383G1237 CM024070.1 + View
Vigna mungo VMungo1127G0665 CM024076.1 + View
Vitis vinifera GSVIVG01025307001 chr6 - View