Gene: AT3G20840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G20840
  • Transcript Identifier AT3G20840.1
  • Gene Type Coding gene
  • Location Chr3 : 7300764-7303370 : positive

Gene Family Information

  • ID HOM05D000138
  • #Genes/#Species 2624/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G20840.1
  • symbol PLT1
  • full_name PLETHORA 1
  • uniprot Q5YGP8

Descriptions

  • Description Integrase-type DNA-binding superfamily protein
  • Computational description PLETHORA 1 (PLT1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G51190.1); Has 7378 Blast hits to 5365 proteins in 273 species: Archae - 0; Bacteria - 8; Metazoa - 48; Fungi - 6; Plants - 7088; Viruses - 2; Other Eukaryotes - 226 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010449
IGI
Gene Ontologyroot meristem growth1
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009873
IEA
GOA Databaseethylene-activated signaling pathway
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0000723
IDA
Gene Ontologytelomere maintenance1
GO:0048364
IMP, IGI
Gene Ontologyroot development2 3
GO:0019827
IMP
Gene Ontologystem cell population maintenance2
GO:0007389
IMP
Gene Ontologypattern specification process2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0003700
IEA
GOA DatabaseDNA-binding transcription factor activity
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity4
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding6

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM
Gene Ontologynucleus2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001471 AP2/ERF domain
IPR016177 DNA-binding domain superfamily
IPR036955 AP2/ERF domain superfamily
Mapman id Description
15.5.7.3 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2)