Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Actinidia chinensis Actinidia19646 Lachesis_group17 + View
Arabidopsis lyrata AL6G27150 scaffold_6 + View
Amaranthus hybridus Ah.06g195220 HIV Tat-specific factor 1 (Tat-SF1) AmaHy_arrow1_Scaffold_6 - View
Arabidopsis thaliana AT5G16260 RNA binding (RRM/RBD/RNP motifs) family protein Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels%2C possibly via nonsense-mediated mRNA decay. EARLY FLOWERING 9 (ELF9)%3B FUNCTIONS IN: mRNA binding%2C RNA binding%3B INVOLVED IN: negative regulation of flower development%2C nuclear-transcribed mRNA catabolic process%2C nonsense-mediated decay%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C GYF (InterPro:IPR003169)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Beta vulgaris EL10Ac4g10030 K13093 - HIV Tat-specific factor 1 (HTATSF1) Chr4_EL10_PGA_scaffold1 + View
Cannabis sativa CANSAT64G0126 NC_044379.1 + View
Corylus avellana Haze_04614 Protein of unknown function 2 + View
Coffea canephora Cc09_g04140 RNA binding (RRM/RBD/RNP motifs) family protein chr9 - View
Carpinus fangiana Cfa006223 Cfa02 + View
Cardamine hirsuta CARHR197050 Nuclear mRNA splicing factor-associated protein, putative Chr6 - View
Carya illinoinensis CiPaw.08G111700 K13093 - HIV Tat-specific factor 1 (HTATSF1) Chr08 - View
Carica papaya Cpa.g.sc88.4 supercontig_88 + View
Capsella rubella Carub.0006s1445 K13093 - HIV Tat-specific factor 1 (HTATSF1) scaffold_6 + View
Davidia involucrata Dinv17137 GWHABJS00000009 - View
Durio zibethinus Duzib128G1295 NW_019168481.1 + View
Erigeron canadensis ECA232G4784 Conyza_canadensis_scaffold:2 - View
Erythranthe guttata Migut.F02087 scaffold_6 - View
Eutrema salsugineum Thhalv10013396m.g K13093 - HIV Tat-specific factor 1 (HTATSF1) scaffold_2 + View
Fragaria x ananassa FAN09G3357 K13093 - HIV Tat-specific factor 1 (HTATSF1) Fvb6-2 + View
Fragaria x ananassa FAN02G4331 K13093 - HIV Tat-specific factor 1 (HTATSF1) Fvb6-4 - View
Fragaria vesca FvH4_6g00060 K13093 - HIV Tat-specific factor 1 (HTATSF1) Fvb6 - View
Malus domestica MD00G1017100 RNA binding (RRM/RBD/RNP motifs) family protein Chr00 - View
Malus domestica MD12G1261400 RNA binding (RRM/RBD/RNP motifs) family protein Chr12 - View
Manihot esculenta Manes.13G000300 Chromosome13 - View
Nicotiana tabacum Nitab4.5_0001003g0200 Nucleotide-binding, alpha-beta plait, Domain of unknown function DUF4339, GYF, RNA recognition motif domain, RNA recognition motif domain, eukaryote Nitab4.5_0001003 - View
Petunia axillaris Peaxi162Scf00254g00618 RNA binding protein ELF9 Peaxi162Scf00254 + View
Prunus persica Prupe.6G365400 K13093 - HIV Tat-specific factor 1 (HTATSF1) Pp06 + View
Populus trichocarpa Potri.008G078200 K13093 - HIV Tat-specific factor 1 (HTATSF1) Chr08 + View
Populus trichocarpa Potri.010G179000 K13093 - HIV Tat-specific factor 1 (HTATSF1) Chr10 - View
Rosa chinensis RcHm_v2.0_Chr3g0447391 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim05G0163700 chr05 - View
Salix brachista Sabra10G0137300 GWHAAZH00000010 - View
Salix brachista Sabra08G0058100 GWHAAZH00000008 + View
Simmondsia chinensis Sc16g0010670 GWHAASQ00000016 + View
Solanum lycopersicum Solyc11g008700.2 splicing factor U2AF-associated protein 2 (AHRD V3.3 *** A0A2I4FMJ6_9ROSI) SL4.0ch11 - View
Schrenkiella parvula Sp6g27900 K13093 - HIV Tat-specific factor 1 (HTATSF1) ch6-6 - View
Selenicereus undatus Hund07384 Scaffold_33676 + View
Trochodendron aralioides TAR362G0740 group17 + View
Tripterygium wilfordii TWI36G1457 NC_052237.1 - View
Vitis vinifera GSVIVG01003992001 chrUn + View