Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen02g013960 ATU2AF65A | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , U2 snRNP auxilliary factor, large subunit, splicing factor | BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor . Spenn-ch02 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G15530 LG-8 + View
Aethionema arabicum Aa31LG6G13490 LG-6 - View
Acer truncatum Atru.chr3.546 chr3 + View
Actinidia chinensis Actinidia36546 Lachesis_group4 + View
Actinidia chinensis Actinidia35651 Lachesis_group25 + View
Actinidia chinensis Actinidia19171 Lachesis_group8 - View
Arabidopsis lyrata AL7G14320 scaffold_7 + View
Aquilegia oxysepala Aqoxy6G01047 CHR06 + View
Aquilegia oxysepala Aqoxy5G01678 CHR05 + View
Arabidopsis thaliana AT4G36690 U2 snRNP auxilliary factor, large subunit, splicing factor ATU2AF65A%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%2C defense response to bacterium%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C U2 snRNP auxilliary factor%2C large subunit%2C splicing factor (InterPro:IPR006529)%3B BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor%2C large subunit%2C splicing factor (TAIR:AT1G60900.1)%3B Has 66106 Blast hits to 34639 proteins in 1663 species: Archae - 71%3B Bacteria - 4965%3B Metazoa - 34951%3B Fungi - 7331%3B Plants - 6616%3B Viruses - 285%3B Other Eukaryotes - 11887 (source: NCBI BLink). ATU2AF65A%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: nuclear mRNA splicing%2C via spliceosome%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C U2 snRNP auxilliary factor%2C large subunit%2C splicing factor (InterPro:IPR006529)%3B BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor%2C large subunit%2C splicing factor (TAIR:AT1G60900.1). Chr4 - View
Brassica carinata BcaB03g12376 ChrB03 + View
Brassica carinata BcaB07g31657 ChrB07 + View
Brassica carinata BcaC01g00448 ChrC01 + View
Brassica napus C03p79960 C03 + View
Brassica napus A01p02210 A01 + View
Brassica napus A08p22350 A08 - View
Brassica napus C01p02410 C01 + View
Brassica napus C09p14080 C09 - View
Brassica oleracea BolC1t00232H C1 + View
Brassica oleracea BolC9t54305H C9 - View
Brassica oleracea BolC3t20248H C3 + View
Brassica rapa BraA08t34191Z A08 - View
Brassica rapa BraA01t00209Z A01 + View
Beta vulgaris EL10Ac6g14918 K12837 - splicing factor U2AF 65 kDa subunit (U2AF2) Chr6_EL10_PGA_scaffold0 + View
Camellia sinensis var. sinensis CSS0047490 PREDICTED: splicing factor U2af large subunit B isoform X4 [Vitis vinifera] Chr1 - View
Camellia sinensis var. sinensis CSS0042908 U2 snRNP auxiliary factor large subunit [Solanum melongena] Chr2 + View
Capsicum annuum CAN.G358.120 PGAv.1.6.scaffold358 + View
Cannabis sativa CANSAT01G0666 NC_044373.1 + View
Coffea canephora Cc07_g09250 Splicing factor U2af large subunit B chr7 + View
Citrus clementina Ciclev10025221m.g scaffold_7 - View
Carpinus fangiana Cfa004284 Cfa01 + View
Cardamine hirsuta CARHR245030 Splicing factor U2af large subunit A Chr7 - View
Carya illinoinensis CiPaw.01G035100 KOG0120//KOG0131 - Splicing factor U2AF, large subunit (RRM superfamily) // Splicing factor 3b, subunit 4 Chr01 + View
Carya illinoinensis CiPaw.02G015700 KOG0124 - Polypyrimidine tract-binding protein PUF60 (RRM superfamily) Chr02 + View
Chenopodium quinoa AUR62003179 U2AF65B: Splicing factor U2af large subunit B C_Quinoa_Scaffold_1000 - View
Chenopodium quinoa AUR62007999 U2AF65B: Splicing factor U2af large subunit B C_Quinoa_Scaffold_2646 - View
Capsella rubella Carub.0007s0363 PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED scaffold_7 + View
Daucus carota DCAR_025929 hypothetical protein DCARv2_Chr7 - View
Daucus carota DCAR_017245 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv26814 GWHABJS00000021 - View
Durio zibethinus Duzib147G0048 NW_019168470.1 + View
Durio zibethinus Duzib264G0521 NW_019167960.1 + View
Erigeron canadensis ECA232G2130 Conyza_canadensis_scaffold:2 - View
Eucalyptus grandis Eucgr.I02460 Chr09 - View
Eutrema salsugineum Thhalv10022618m.g K12837 - splicing factor U2AF 65 kDa subunit (U2AF2) scaffold_11 + View
Eutrema salsugineum Thhalv10024786m.g PTHR23139//PTHR23139:SF61 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED scaffold_1 + View
Fragaria x ananassa FAN19G0548 K12837 - splicing factor U2AF 65 kDa subunit (U2AF2) Fvb1-4 - View
Fragaria x ananassa FAN23G0428 K12837 - splicing factor U2AF 65 kDa subunit (U2AF2) Fvb1-3 - View
Fragaria x ananassa FAN26G0747 PF00076//PF01535//PF05055//PF05659//PF13041 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // PPR repeat (PPR) // Protein of unknown function (DUF677) (DUF677) // Arabidopsis broad-spectrum mildew resistance protein RPW8 (RPW8) // PPR repeat family (PPR_2) Fvb1-2 - View
Fragaria vesca FvH4_1g13680 KOG0120//KOG0131 - Splicing factor U2AF, large subunit (RRM superfamily) // Splicing factor 3b, subunit 4 Fvb1 - View
Gossypium hirsutum Gohir.D12G065500 PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED D12 - View
Gossypium hirsutum Gohir.A12G065400 PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED A12 - View
Gossypium raimondii Gorai.008G068800 Chr08 - View
Helianthus annuus HanXRQChr11g0324861 Putative U2 snRNP auxilliary factor, large subunit, splicing factor; Nucleotide-binding alpha-beta plait domain HanXRQChr11 + View
Lonicera japonica Lj2C449T7 GWHAAZE00000002 + View
Lonicera japonica Lj4A198G29 GWHAAZE00000004 + View
Lactuca sativa Lsat_1_v5_gn_4_150960 Lsat_1_v8_lg_4 + View
Magnolia biondii MBI16_g17453_MAGBIO AED:0.23 Chr16 - View
Magnolia biondii MBI16_g37379_MAGBIO AED:0.29 Chr16 + View
Malus domestica MD02G1151300 U2 snRNP auxilliary factor Chr02 - View
Malus domestica MD15G1265800 U2 snRNP auxilliary factor Chr15 - View
Manihot esculenta Manes.13G137500 Chromosome13 + View
Nelumbo nucifera Nn1g05069 chr1 + View
Nelumbo nucifera Nn5g29539 chr5 - View
Nicotiana tabacum Nitab4.5_0001279g0080 Nucleotide-binding, alpha-beta plait, RNA recognition motif domain, RNA recognition motif domain, eukaryote, U2 snRNP auxilliary factor, large subunit, splicing factor Nitab4.5_0001279 + View
Nicotiana tabacum Nitab4.5_0000628g0060 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait, U2 snRNP auxilliary factor, large subunit, splicing factor, Domain of unknown function DUF4283, RNA recognition motif domain, eukaryote Nitab4.5_0000628 + View
Petunia axillaris Peaxi162Scf00515g00224 Splicing factor U2af large subunit A Peaxi162Scf00515 - View
Petunia axillaris Peaxi162Scf00008g04010 Splicing factor U2af large subunit B Peaxi162Scf00008 + View
Punica granatum PGR119G0421 NC_045132.1 - View
Prunus persica Prupe.7G151700 PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED Pp07 + View
Papaver somniferum PSO675G3516 NC_039358.1 - View
Populus trichocarpa Potri.007G028500 PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED Chr07 - View
Populus trichocarpa Potri.005G125500 PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED Chr05 - View
Quercus lobata QL06p045494 6 + View
Rosa chinensis RcHm_v2.0_Chr2g0102011 RcHm_v2.0_Chr2 - View
Rhododendron simsii Rhsim08G0113200 chr08 + View
Salix brachista Sabra07G0024700 GWHAAZH00000007 - View
Salix brachista Sabra05G0103100 GWHAAZH00000005 - View
Simmondsia chinensis Sc03g0000860 GWHAASQ00000003 - View
Solanum lycopersicum Solyc02g085570.4 U2 snRNP auxiliary factor large subunit (AHRD V3.3 *** A0A2G2XGE1_CAPBA) SL4.0ch02 + View
Solanum lycopersicum Solyc02g062920.3 U2 snRNP auxiliary factor large subunit (AHRD V3.3 *** A0A2G3AAC4_CAPAN) SL4.0ch02 + View
Schrenkiella parvula Sp7g34350 K12837 - splicing factor U2AF 65 kDa subunit (U2AF2) ch7-6 - View
Solanum tuberosum PGSC0003DMG400015500 Splicing factor U2af large subunit B ST4.03ch02 + View
Solanum tuberosum PGSC0003DMG400012685 U2 snRNP auxiliary factor large subunit ST4.03ch02 + View
Selenicereus undatus Hund16582 Scaffold_33677 + View
Trochodendron aralioides TAR381G0518 group11 - View
Trochodendron aralioides TAR628G1301 group5 - View
Trochodendron aralioides TAR376G1092 group14 - View
Theobroma cacao Thecc.01G039000 Splicing factor U2af large subunit A Chromosome_1 - View
Tarenaya hassleriana THA.LOC104819796 splicing factor U2af large subunit A NW_010966177.1 - View
Tarenaya hassleriana THA.LOC104807441 splicing factor U2af large subunit A NW_010963495.1 + View
Tripterygium wilfordii TWI09G0181 NC_052245.1 + View
Tripterygium wilfordii TWI73G1274 NC_052232.1 - View
Vaccinium macrocarpon vmacro17856 Similar to U2AF65B: Splicing factor U2af large subunit B (Nicotiana plumbaginifolia OX%3D4092) chr3_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01018993001 chr4 + View