Gene: Sopen02g013960

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g013960
  • Transcript Identifier Sopen02g013960.2
  • Gene Type Coding gene
  • Location Spenn-ch02 : 37659720-37669926 : positive

Gene Family Information

  • ID HOM05D001563
  • #Genes/#Species 409/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g013960.2

Descriptions

  • Description ATU2AF65A | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: nuclear mRNA splicing, via spliceosome | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , U2 snRNP auxilliary factor, large subunit, splicing factor | BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor .
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
InterPromRNA processing
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT4G36690

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G36690
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G36690

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G36690
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT4G36690

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor
IPR003954 RNA recognition motif domain, eukaryote
Mapman id Description
16.2.1.2.11.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.large subunit U2AF2/U2AF65