Gene: AT4G36690

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G36690
  • Transcript Identifier AT4G36690.4
  • Gene Type Coding gene
  • Location Chr4 : 17294139-17297609 : negative

Gene Family Information

  • ID HOM05D001563
  • #Genes/#Species 409/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G36690.4
  • symbol ATU2AF65A
  • uniprot O23212

Descriptions

  • Description U2 snRNP auxilliary factor, large subunit, splicing factor
  • Computational description ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, defense response to bacterium; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1); Has 66106 Blast hits to 34639 proteins in 1663 species: Archae - 71; Bacteria - 4965; Metazoa - 34951; Fungi - 7331; Plants - 6616; Viruses - 285; Other Eukaryotes - 11887 (source: NCBI BLink).
  • Computational description ATU2AF65A; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0042742
IEP
GOA Databasedefense response to bacterium
GO:0000398
ISS
Gene OntologymRNA splicing, via spliceosome1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008187
IBA
Gene Ontologypoly-pyrimidine tract binding2
GO:0030628
IBA
Gene Ontologypre-mRNA 3'-splice site binding2
GO:0003729
IDA
Gene OntologymRNA binding3
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000243
IBA
Gene Ontologycommitment complex2
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA, IPI
ISM
Gene Ontologynucleus5
GO:0005634
IEA
InterPronucleus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0071004
IBA
Gene OntologyU2-type prespliceosome2
GO:0089701
IBA
Gene OntologyU2AF complex2
GO:0016607
IBA
Gene Ontologynuclear speck2
GO:0005730
IDA
Gene Ontologynucleolus6
GO:0005654
IDA
Gene Ontologynucleoplasm6

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.2.1.2.11.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.large subunit U2AF2/U2AF65