Gene: CiPaw.02G015700

General Information

Structural Information

  • Species Carya illinoinensis
  • Gene Identifier CiPaw.02G015700
  • Transcript Identifier CiPaw.02G015700.3
  • Gene Type Coding gene
  • Location Chr02 : 2820670-2829705 : positive

Gene Family Information

  • ID HOM05D001563
  • #Genes/#Species 409/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id CiPaw.02G015700.v1.1
  • pacid 45844957
  • locus Caril.02G016600

Descriptions

  • Description KOG0124 - Polypyrimidine tract-binding protein PUF60 (RRM superfamily)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
InterPromRNA processing
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT1G60900
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT4G36690
GO:0000398
ISO
PLAZA Integrative OrthologymRNA splicing, via spliceosome AT1G60900

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G60900
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT4G36690

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G60900
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT4G36690
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT4G36690

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR006529 U2 snRNP auxilliary factor, large subunit, splicing factor
Mapman id Description
16.2.1.2.11.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.large subunit U2AF2/U2AF65