Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG11G13360 LG-11 - View
Arabidopsis lyrata AL6G27150 scaffold_6 + View
Arabidopsis thaliana AT5G16260 RNA binding (RRM/RBD/RNP motifs) family protein Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels%2C possibly via nonsense-mediated mRNA decay. EARLY FLOWERING 9 (ELF9)%3B FUNCTIONS IN: mRNA binding%2C RNA binding%3B INVOLVED IN: negative regulation of flower development%2C nuclear-transcribed mRNA catabolic process%2C nonsense-mediated decay%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C GYF (InterPro:IPR003169)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 + View
Cannabis sativa CANSAT64G0126 NC_044379.1 + View
Corylus avellana Haze_04614 Protein of unknown function 2 + View
Coffea canephora Cc09_g04140 RNA binding (RRM/RBD/RNP motifs) family protein chr9 - View
Carpinus fangiana Cfa006223 Cfa02 + View
Carica papaya Cpa.g.sc88.4 supercontig_88 + View
Chenopodium quinoa AUR62006615 Htatsf1: HIV Tat-specific factor 1 homolog C_Quinoa_Scaffold_3429 - View
Capsella rubella Carub.0006s1445 K13093 - HIV Tat-specific factor 1 (HTATSF1) scaffold_6 + View
Davidia involucrata Dinv17137 GWHABJS00000009 - View
Erigeron canadensis ECA232G4784 Conyza_canadensis_scaffold:2 - View
Erythranthe guttata Migut.F02087 scaffold_6 - View
Eutrema salsugineum Thhalv10013396m.g K13093 - HIV Tat-specific factor 1 (HTATSF1) scaffold_2 + View
Fragaria x ananassa FAN09G3357 K13093 - HIV Tat-specific factor 1 (HTATSF1) Fvb6-2 + View
Fragaria vesca FvH4_6g00060 K13093 - HIV Tat-specific factor 1 (HTATSF1) Fvb6 - View
Manihot esculenta Manes.13G000300 Chromosome13 - View
Nicotiana tabacum Nitab4.5_0001003g0200 Nucleotide-binding, alpha-beta plait, Domain of unknown function DUF4339, GYF, RNA recognition motif domain, RNA recognition motif domain, eukaryote Nitab4.5_0001003 - View
Petunia axillaris Peaxi162Scf00254g00618 RNA binding protein ELF9 Peaxi162Scf00254 + View
Prunus persica Prupe.6G365400 K13093 - HIV Tat-specific factor 1 (HTATSF1) Pp06 + View
Populus trichocarpa Potri.010G179000 K13093 - HIV Tat-specific factor 1 (HTATSF1) Chr10 - View
Populus trichocarpa Potri.008G078200 K13093 - HIV Tat-specific factor 1 (HTATSF1) Chr08 + View
Rosa chinensis RcHm_v2.0_Chr3g0447391 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim05G0163700 chr05 - View
Salix brachista Sabra08G0058100 GWHAAZH00000008 + View
Salix brachista Sabra10G0137300 GWHAAZH00000010 - View
Solanum pennellii Sopen11g004480 Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. | EARLY FLOWERING 9 (ELF9) | FUNCTIONS IN: mRNA binding, RNA binding | INVOLVED IN: negative regulation of flower development, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , GYF Spenn-ch11 - View
Tripterygium wilfordii TWI36G1457 NC_052237.1 - View
Vitis vinifera GSVIVG01003992001 chrUn + View