Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Aethionema arabicum | Aa31LG11G13360 | LG-11 | - | View | |
Arabidopsis lyrata | AL6G27150 | scaffold_6 | + | View | |
Arabidopsis thaliana | AT5G16260 | RNA binding (RRM/RBD/RNP motifs) family protein Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels%2C possibly via nonsense-mediated mRNA decay. EARLY FLOWERING 9 (ELF9)%3B FUNCTIONS IN: mRNA binding%2C RNA binding%3B INVOLVED IN: negative regulation of flower development%2C nuclear-transcribed mRNA catabolic process%2C nonsense-mediated decay%3B LOCATED IN: nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C GYF (InterPro:IPR003169)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). | Chr5 | + | View |
Cannabis sativa | CANSAT64G0126 | NC_044379.1 | + | View | |
Corylus avellana | Haze_04614 | Protein of unknown function | 2 | + | View |
Coffea canephora | Cc09_g04140 | RNA binding (RRM/RBD/RNP motifs) family protein | chr9 | - | View |
Carpinus fangiana | Cfa006223 | Cfa02 | + | View | |
Carica papaya | Cpa.g.sc88.4 | supercontig_88 | + | View | |
Chenopodium quinoa | AUR62006615 | Htatsf1: HIV Tat-specific factor 1 homolog | C_Quinoa_Scaffold_3429 | - | View |
Capsella rubella | Carub.0006s1445 | K13093 - HIV Tat-specific factor 1 (HTATSF1) | scaffold_6 | + | View |
Davidia involucrata | Dinv17137 | GWHABJS00000009 | - | View | |
Erigeron canadensis | ECA232G4784 | Conyza_canadensis_scaffold:2 | - | View | |
Erythranthe guttata | Migut.F02087 | scaffold_6 | - | View | |
Eutrema salsugineum | Thhalv10013396m.g | K13093 - HIV Tat-specific factor 1 (HTATSF1) | scaffold_2 | + | View |
Fragaria x ananassa | FAN09G3357 | K13093 - HIV Tat-specific factor 1 (HTATSF1) | Fvb6-2 | + | View |
Fragaria vesca | FvH4_6g00060 | K13093 - HIV Tat-specific factor 1 (HTATSF1) | Fvb6 | - | View |
Manihot esculenta | Manes.13G000300 | Chromosome13 | - | View | |
Nicotiana tabacum | Nitab4.5_0001003g0200 | Nucleotide-binding, alpha-beta plait, Domain of unknown function DUF4339, GYF, RNA recognition motif domain, RNA recognition motif domain, eukaryote | Nitab4.5_0001003 | - | View |
Petunia axillaris | Peaxi162Scf00254g00618 | RNA binding protein ELF9 | Peaxi162Scf00254 | + | View |
Prunus persica | Prupe.6G365400 | K13093 - HIV Tat-specific factor 1 (HTATSF1) | Pp06 | + | View |
Populus trichocarpa | Potri.010G179000 | K13093 - HIV Tat-specific factor 1 (HTATSF1) | Chr10 | - | View |
Populus trichocarpa | Potri.008G078200 | K13093 - HIV Tat-specific factor 1 (HTATSF1) | Chr08 | + | View |
Rosa chinensis | RcHm_v2.0_Chr3g0447391 | RcHm_v2.0_Chr3 | - | View | |
Rhododendron simsii | Rhsim05G0163700 | chr05 | - | View | |
Salix brachista | Sabra08G0058100 | GWHAAZH00000008 | + | View | |
Salix brachista | Sabra10G0137300 | GWHAAZH00000010 | - | View | |
Solanum pennellii | Sopen11g004480 | Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. | EARLY FLOWERING 9 (ELF9) | FUNCTIONS IN: mRNA binding, RNA binding | INVOLVED IN: negative regulation of flower development, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , GYF | Spenn-ch11 | - | View |
Tripterygium wilfordii | TWI36G1457 | NC_052237.1 | - | View | |
Vitis vinifera | GSVIVG01003992001 | chrUn | + | View |