Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold122G33318 scaffold122 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG8G1330 LG-8 + View
Actinidia chinensis Actinidia26015 Lachesis_group2 - View
Actinidia chinensis Actinidia31166 Lachesis_group9 - View
Actinidia chinensis Actinidia32204 Lachesis_group27 + View
Arabidopsis lyrata AL3G26330 scaffold_3 + View
Arabidopsis lyrata AL1G29640 scaffold_1 - View
Arabidopsis lyrata AL1G62780 scaffold_1 - View
Avicennia marina MSTRG.10932 ScioBoG_14204_HRSCAF_14270 - View
Avicennia marina MSTRG.22535 ScioBoG_3703_HRSCAF_3719 - View
Arabidopsis thaliana AT3G14100 RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: mRNA 3'-UTR binding%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein 1A (TAIR:AT1G54080.1)%3B Has 33134 Blast hits to 32894 proteins in 1695 species: Archae - 47%3B Bacteria - 3311%3B Metazoa - 12038%3B Fungi - 6892%3B Plants - 9686%3B Viruses - 3%3B Other Eukaryotes - 1157 (source: NCBI BLink). Chr3 + View
Arabidopsis thaliana AT1G17370 oligouridylate binding protein 1B Encodes an RNA%E2%80%93binding protein involved in stress granule formation. Regulated by a transposable element small RNA. oligouridylate binding protein 1B (UBP1B)%3B FUNCTIONS IN: mRNA 3'-UTR binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1)%3B Has 681 Blast hits to 681 proteins in 21 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 0%3B Fungi - 0%3B Plants - 681%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr1 - View
Arabidopsis thaliana AT1G54080 oligouridylate-binding protein 1A oligouridylate-binding protein 1A (UBP1A)%3B FUNCTIONS IN: mRNA 3'-UTR binding%3B LOCATED IN: plasma membrane%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1)%3B Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2%3B Bacteria - 177%3B Metazoa - 9876%3B Fungi - 6429%3B Plants - 6014%3B Viruses - 0%3B Other Eukaryotes - 3910 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaC08g43588 ChrC08 - View
Brassica napus A06p00570 A06 + View
Brassica napus C03p91950 C03 - View
Brassica napus C06p09870 C06 - View
Brassica oleracea BolC6t36058H C6 - View
Corylus avellana Haze_16064 Similar to UBP1B: Oligouridylate-binding protein 1B (Arabidopsis thaliana OX%3D3702) 11 + View
Coffea canephora Cc04_g01060 RNA-binding (RRM/RBD/RNP motifs) family protein chr4 - View
Citrus clementina Ciclev10025673m.g scaffold_7 + View
Ceratophyllum demersum CDE07G1649 5 + View
Cardamine hirsuta CARHR017970 RNA-binding protein Chr1 - View
Cardamine hirsuta CARHR088960 RNA-binding protein Chr3 + View
Cardamine hirsuta CARHR044410 RNA-binding protein Chr1 - View
Carya illinoinensis CiPaw.02G133800 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) Chr02 - View
Citrullus lanatus ClCG09G001130 RNA-binding protein CG_Chr09 + View
Citrullus lanatus ClCG07G014480 RNA-binding protein CG_Chr07 - View
Cucumis melo MELO3C024335.2 oligouridylate-binding protein 1B-like chr01 - View
Chenopodium quinoa AUR62001445 UBP1B: Oligouridylate-binding protein 1B C_Quinoa_Scaffold_2716 - View
Capsella rubella Carub.0003s1371 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) scaffold_3 + View
Capsella rubella Carub.0001s1714 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) scaffold_1 - View
Capsella rubella Carub.0001s4331 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) scaffold_1 - View
Cucumis sativus L. CsaV3_7G034260 Oligouridylate-binding protein like chr7 - View
Cucumis sativus L. CsaV3_3G030840 Oligouridylate-binding protein like chr3 + View
Davidia involucrata Dinv37847 GWHABJS00000006 + View
Durio zibethinus Duzib235G1483 NW_019167982.1 + View
Durio zibethinus Duzib192G0442 NW_019168037.1 - View
Durio zibethinus Duzib160G0809 NW_019168015.1 + View
Erigeron canadensis ECA247G0180 Conyza_canadensis_scaffold:7 + View
Erigeron canadensis ECA234G1706 Conyza_canadensis_scaffold:4 - View
Erythranthe guttata Migut.D00925 scaffold_4 - View
Erythranthe guttata Migut.I01105 scaffold_9 + View
Eutrema salsugineum Thhalv10007746m.g K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) scaffold_5 + View
Eutrema salsugineum Thhalv10020804m.g scaffold_13 - View
Gossypium hirsutum Gohir.D10G058000 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) D10 + View
Gossypium hirsutum Gohir.D06G201600 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) D06 + View
Gossypium hirsutum Gohir.D05G141100 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) D05 - View
Gossypium hirsutum Gohir.A10G056100 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) A10 + View
Gossypium hirsutum Gohir.A05G138900 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) A05 - View
Gossypium raimondii Gorai.009G145300 Chr09 - View
Gossypium raimondii Gorai.011G062100 Chr11 + View
Helianthus annuus HanXRQChr09g0277111 Probable oligouridylate binding protein 1B HanXRQChr09 + View
Lupinus albus Lalb_Chr10g0101341 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) Lalb_Chr10 - View
Lupinus albus Lalb_Chr17g0343471 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) Lalb_Chr17 - View
Lotus japonicus Lj3g0004026 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) chr3 + View
Lonicera japonica Lj9C534G6 GWHAAZE00000009 + View
Lonicera japonica Lj5C32G11 GWHAAZE00000005 - View
Lactuca sativa Lsat_1_v5_gn_4_91421 Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_1_37821 Lsat_1_v8_lg_1 + View
Manihot esculenta Manes.04G148000 Chromosome04 + View
Manihot esculenta Manes.11G016600 Chromosome11 - View
Petunia axillaris Peaxi162Scf00207g01530 oligouridylate binding protein 1B Peaxi162Scf00207 + View
Petunia axillaris Peaxi162Scf00038g01947 oligouridylate binding protein 1B Peaxi162Scf00038 - View
Punica granatum PGR119G0971 NC_045132.1 + View
Pisum sativum Psat4g167280 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr4LG4 + View
Populus trichocarpa Potri.001G166100 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) Chr01 - View
Rhododendron simsii Rhsim08G0241100 chr08 + View
Rhododendron simsii Rhsim12G0211600 chr12 + View
Salix brachista Sabra03G0040500 GWHAAZH00000003 + View
Simmondsia chinensis Sc12g0010790 GWHAASQ00000012 + View
Sechium edule Sed0024752 LG09 - View
Sechium edule Sed0024915 LG03 + View
Solanum lycopersicum Solyc06g063000.3 Oligouridylate-binding protein 1A (AHRD V3.3 *** A0A2G3C8H4_CAPCH) SL4.0ch06 + View
Solanum lycopersicum Solyc03g122180.4 Oligouridylate-binding protein 1A (AHRD V3.3 *** A0A2G3D0E7_CAPCH) SL4.0ch03 - View
Schrenkiella parvula Sp1g40520 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) ch1-2 - View
Schrenkiella parvula Sp1g15520 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) ch1-1 - View
Schrenkiella parvula Sp3g12360 K13201 - nucleolysin TIA-1/TIAR (TIA1, TIAL1) ch3-1 + View
Solanum pennellii Sopen06g022450 oligouridylate binding protein 1B (UBP1B) | FUNCTIONS IN: mRNA 3-UTR binding | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400004865 Oligouridylate binding protein ST4.03ch06 - View
Solanum tuberosum PGSC0003DMG400022889 Oligouridylate binding protein ST4.03ch03 - View
Selenicereus undatus Hund05720 Scaffold_19641 - View
Trochodendron aralioides TAR624G0070 group9 - View
Tarenaya hassleriana THA.LOC104815617 oligouridylate-binding protein 1C-like NW_010965696.1 - View
Tarenaya hassleriana THA.LOC104810373 oligouridylate-binding protein 1B-like NW_010965216.1 + View
Tarenaya hassleriana THA.LOC104812263 oligouridylate-binding protein 1B NW_010965372.1 + View
Tripterygium wilfordii TWI59G0996 NC_052248.1 - View
Tripterygium wilfordii TWI23G0754 NC_052239.1 + View
Vaccinium macrocarpon vmacro15053 Similar to UBP1B: Oligouridylate-binding protein 1B (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0331G0869 CM024078.1 + View
Vitis vinifera GSVIVG01016720001 chr9 - View