Gene: AT1G54080

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G54080
  • Transcript Identifier AT1G54080.1
  • Gene Type Coding gene
  • Location Chr1 : 20183923-20186824 : negative

Gene Family Information

  • ID HOM05D001722
  • #Genes/#Species 376/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G54080.1
  • symbol UBP1A
  • uniprot Q9SYG4

Descriptions

  • Description oligouridylate-binding protein 1A
  • Computational description oligouridylate-binding protein 1A (UBP1A); FUNCTIONS IN: mRNA 3'-UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 26408 Blast hits to 16156 proteins in 1551 species: Archae - 2; Bacteria - 177; Metazoa - 9876; Fungi - 6429; Plants - 6014; Viruses - 0; Other Eukaryotes - 3910 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding2 3 4
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
RCA
Gene Ontologycytosol5
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.8.3 RNA processing.mRNA sequestration.mRNA-binding regulatory factor (UBP1)