Gene: Sopen06g022450
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g022450
- Transcript Identifier Sopen06g022450.1
- Gene Type Coding gene
- Location Spenn-ch06 : 50030427-50035554 : positive
Gene Family Information
- ID HOM05D001722
- #Genes/#Species 376/95
- Phylogenetic origin
- ID ORTHO05D001910
- #Genes/#Species 338/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen06g022450.1
Descriptions
- Description oligouridylate binding protein 1B (UBP1B) | FUNCTIONS IN: mRNA 3-UTR binding | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034063 | ISO | PLAZA Integrative Orthology | stress granule assembly | AT3G14100 |
| GO:0071456 | ISO | PLAZA Integrative Orthology | cellular response to hypoxia | AT3G14100 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G54080 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G14100 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G14100 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT3G14100 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.8.3 | RNA processing.mRNA sequestration.mRNA-binding regulatory factor (UBP1) |