Gene: AT3G14100
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G14100
- Transcript Identifier AT3G14100.1
- Gene Type Coding gene
- Location Chr3 : 4673027-4675950 : positive
Gene Family Information
- ID HOM05D001722
- #Genes/#Species 376/95
- Phylogenetic origin
- ID ORTHO05D001910
- #Genes/#Species 338/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G14100.1
- uniprot Q9LJH8
Descriptions
- Description RNA-binding (RRM/RBD/RNP motifs) family protein
- Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: oligouridylate-binding protein 1A (TAIR:AT1G54080.1); Has 33134 Blast hits to 32894 proteins in 1695 species: Archae - 47; Bacteria - 3311; Metazoa - 12038; Fungi - 6892; Plants - 9686; Viruses - 3; Other Eukaryotes - 1157 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0034063 | IDA | Gene Ontology | stress granule assembly | 1 |
| GO:0071456 | IDA | Gene Ontology | cellular response to hypoxia | 1 |
| GO:0006397 | IEA | GOA Database | mRNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA, HDA IBA | Gene Ontology | mRNA binding | 1 2 3 |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | Os08g0520300 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | RCA | Gene Ontology | cytosol | 4 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA | Gene Ontology | nucleus | 1 |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.8.3 | RNA processing.mRNA sequestration.mRNA-binding regulatory factor (UBP1) |