Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
SGA_v2.0_scaffold1G00371 scaffold1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G2070 LG-5 + View
Acer truncatum Atru.chr5.1153 chr5 + View
Actinidia chinensis Actinidia24346 Lachesis_group24 - View
Actinidia chinensis Actinidia24826 Lachesis_group15 - View
Arabidopsis lyrata AL1G12240 scaffold_1 + View
Arabidopsis lyrata AL6G50640 scaffold_6 - View
Amaranthus hybridus Ah.08g213070 AmaHy_arrow1_Scaffold_8 + View
Aquilegia oxysepala Aqoxy5G00749 CHR05 - View
Aquilegia oxysepala Aqoxy2G02953 CHR02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.QCFS18 PTHR24012//PTHR24012:SF442//PTHR24012:SF487 - FAMILY NOT NAMED // SERINE/ARGININE-RICH SPLICING FACTOR 4 // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TJW25F K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) arahy.Tifrunner.gnm1.Arahy.19 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.DYK1KG K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) arahy.Tifrunner.gnm1.Arahy.09 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.6QLZ34 PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) arahy.Tifrunner.gnm1.Arahy.16 - View
Arabidopsis thaliana AT1G02840 RNA-binding (RRM/RBD/RNP motifs) family protein SR34/SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. SR1%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B LOCATED IN: interchromatin granule%2C nuclear speck%2C nucleus%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2)%3B Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12%3B Bacteria - 1352%3B Metazoa - 20795%3B Fungi - 3692%3B Plants - 3807%3B Viruses - 567%3B Other Eukaryotes - 4906 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT4G02430 RNA-binding (RRM/RBD/RNP motifs) family protein Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010%2C 22:2926. RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3)%3B Has 29 Blast hits to 28 proteins in 15 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 6%3B Fungi - 0%3B Plants - 23%3B Viruses - 0%3B Other Eukaryotes - 0 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaB01g02042 ChrB01 - View
Brassica napus A09p01890 A09 + View
Brassica napus C09p01970 C09 + View
Brassica oleracea BolC9t53129H C9 + View
Brassica rapa BraA02t07460Z A02 + View
Brassica rapa BraA09t35840Z A09 + View
Beta vulgaris EL10Ac7g17497 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr7_EL10_PGA_scaffold5 + View
Camellia sinensis var. sinensis CSS0000532 unknown [Picea sitchensis] Chr11 + View
Camellia sinensis var. sinensis CSS0013176 PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica] Chr13 - View
Cannabis sativa CANSAT25G2342 NC_044370.1 - View
Cicer arietinum L. Ca_09156_v3 Ca_LG3_v3 - View
Cicer arietinum L. Ca_10134_v3 Ca_LG4_v3 - View
Corylus avellana Haze_04929 Similar to SR34: Serine/arginine-rich-splicing factor SR34 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc01_g20780 Hypothetical protein chr1 - View
Citrus clementina Ciclev10002007m.g scaffold_5 - View
Citrus clementina Ciclev10021764m.g scaffold_3 - View
Carpinus fangiana Cfa005920 Cfa02 + View
Carpinus fangiana Cfa006635 Cfa02 - View
Cardamine hirsuta CARHR002180 Arginine/serine-rich splicing factor, putative Chr1 + View
Cardamine hirsuta CARHR250700 Arginine/serine-rich splicing factor, putative Chr8 + View
Carya illinoinensis CiPaw.07G108100 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr07 - View
Carya illinoinensis CiPaw.08G095600 PTHR24012//PTHR24012:SF442 - FAMILY NOT NAMED // SERINE/ARGININE-RICH SPLICING FACTOR 4 Chr08 + View
Carya illinoinensis CiPaw.07G022100 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr07 + View
Citrullus lanatus ClCG09G005890 Arginine/serine-rich splicing factor, putative CG_Chr09 + View
Cucumis melo MELO3C016002.2 Arginine/serine-rich splicing factor, putative chr01 + View
Corchorus olitorius COL.COLO4_23353 hypothetical protein AWUE01018187.1 + View
Chenopodium quinoa AUR62033136 SR34: Serine/arginine-rich-splicing factor SR34 C_Quinoa_Scaffold_2244 - View
Chenopodium quinoa AUR62000755 SR30: Serine/arginine-rich splicing factor SR30 C_Quinoa_Scaffold_2088 + View
Capsella rubella Carub.0006s3470 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) scaffold_6 - View
Capsella rubella Carub.0001s0196 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) scaffold_1 + View
Daucus carota DCAR_012395 hypothetical protein DCARv2_Chr3 - View
Davidia involucrata Dinv33052 GWHABJS00000010 - View
Davidia involucrata Dinv40333 GWHABJS00000005 - View
Davidia involucrata Dinv19698 GWHABJS00000007 + View
Durio zibethinus Duzib133G0003 NW_019167938.1 + View
Durio zibethinus Duzib128G0472 NW_019168481.1 + View
Durio zibethinus Duzib177G0318 NW_019168004.1 - View
Durio zibethinus Duzib211G0006 NW_019168049.1 + View
Erigeron canadensis ECA248G3363 Conyza_canadensis_scaffold:9 - View
Erigeron canadensis ECA236G2979 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.K03474 Chr11 - View
Erythranthe guttata Migut.D00212 scaffold_4 - View
Erythranthe guttata Migut.N01505 scaffold_14 - View
Eutrema salsugineum Thhalv10008507m.g K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) scaffold_5 - View
Eutrema salsugineum Thhalv10028867m.g K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) scaffold_3 + View
Fragaria x ananassa FAN24G0529 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Fvb2-2 + View
Fragaria x ananassa FAN20G1601 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Fvb2-3 + View
Fragaria vesca FvH4_2g25670 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Fvb2 - View
Gossypium hirsutum Gohir.D11G119800 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) D11 + View
Gossypium hirsutum Gohir.A11G114700 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) A11 + View
Glycine max Glyma.03G214400 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Gm03 - View
Glycine max Glyma.20G236800 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Gm20 + View
Glycine max Glyma.19G211100 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Gm19 - View
Gossypium raimondii Gorai.007G128300 Chr07 + View
Helianthus annuus HanXRQChr06g0163811 Putative nucleotide-binding alpha-beta plait domain HanXRQChr06 + View
Lupinus albus Lalb_Chr18g0047011 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Lalb_Chr18 + View
Lupinus albus Lalb_Chr02g0143251 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Lalb_Chr02 - View
Lotus japonicus Lj5g0006745 PTHR24012//PTHR24012:SF442 - FAMILY NOT NAMED // SERINE/ARGININE-RICH SPLICING FACTOR 4 chr5 + View
Lotus japonicus Lj1g0022657 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) chr1 - View
Lonicera japonica Lj2A1193T38 GWHAAZE00000002 - View
Lonicera japonica Lj1C26G3 GWHAAZE00000001 + View
Lactuca sativa Lsat_1_v5_gn_8_53720 Lsat_1_v8_lg_8 + View
Magnolia biondii MBI19_g25351_MAGBIO AED:0.29 Chr19 + View
Malus domestica MD12G1212300 SERINE-ARGININE PROTEIN 30 Chr12 + View
Malus domestica MD03G1287500 RNA-binding (RRM/RBD/RNP motifs) family protein Chr03 - View
Malus domestica MD11G1310700 RNA-binding (RRM/RBD/RNP motifs) family protein Chr11 + View
Malus domestica MD07G1175700 SERINE-ARGININE PROTEIN 30 Chr07 + View
Manihot esculenta Manes.05G062400 Chromosome05 + View
Manihot esculenta Manes.01G218300 Chromosome01 - View
Manihot esculenta Manes.09G171000 Chromosome09 - View
Medicago truncatula Medtr7g108810 pre-mRNA-splicing factor SF2-like protein chr7 - View
Medicago truncatula Medtr1g083400 pre-mRNA-splicing factor SF2-like protein chr1 - View
Nelumbo nucifera Nn3g21471 chr3 - View
Nicotiana tabacum Nitab4.5_0001879g0030 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0001879 - View
Olea europaea Oeu048340.1 chr1 + View
Oryza sativa ssp. japonica Os05g0364600 Similar to pre-mRNA-splicing factor SF2. chr05 + View
Oryza sativa ssp. japonica Os01g0316600 Similar to pre-mRNA-splicing factor SF2. chr01 + View
Oryza sativa ssp. japonica Os07g0673500 Similar to cDNA clone:001-208-C08, full insert sequence (Fragment). Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''. chr07 - View
Oryza sativa ssp. japonica Os03g0344100 Similar to Alternative splicing regulator. Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''. chr03 + View
Petunia axillaris Peaxi162Scf00001g00451 Serine/arginine-rich splicing factor 1 Peaxi162Scf00001 + View
Punica granatum PGR044G2059 NC_045134.1 - View
Prunus persica Prupe.8G260600 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Pp08 - View
Populus trichocarpa Potri.013G015500 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr13 + View
Populus trichocarpa Potri.002G205025 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr02 + View
Populus trichocarpa Potri.005G024600 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr05 + View
Populus trichocarpa Potri.014G129900 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) Chr14 + View
Phaseolus vulgaris Phvul.001G207100 Chr01 - View
Phaseolus vulgaris Phvul.007G197400 Chr07 + View
Quercus lobata QL12p028557 12 + View
Quercus lobata QL03p020105 3 + View
Rosa chinensis RcHm_v2.0_Chr6g0293931 RcHm_v2.0_Chr6 - View
Rhododendron simsii Rhsim01G0284700 chr01 - View
Rhododendron simsii Rhsim13G0010500 chr13 + View
Salix brachista Sabra14G0096500 GWHAAZH00000014 + View
Salix brachista Sabra13G0013600 GWHAAZH00000013 + View
Salix brachista Sabra02G0154300 GWHAAZH00000002 - View
Simmondsia chinensis Sc05g0003900 GWHAASQ00000005 - View
Sechium edule Sed0028034 LG04 + View
Sechium edule Sed0001749 LG07 + View
Sechium edule Sed0014141 LG09 - View
Solanum lycopersicum Solyc09g075090.1 Serine/arginine-rich-splicing factor SR34 (AHRD V3.3 *** A0A0M8KT32_NICAT) SL4.0ch09 - View
Solanum lycopersicum Solyc01g099810.3 Serine/arginine-rich-splicing factor SR34 (AHRD V3.3 *-* A0A0M9UMW1_NICAT) SL4.0ch01 - View
Solanum lycopersicum Solyc06g009060.4 Serine/arginine-rich-splicing factor SR34 (AHRD V3.3 *-* A0A0M8KRE5_NICAT) SL4.0ch06 - View
Schrenkiella parvula Sp6g02340 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) ch6-1 + View
Schrenkiella parvula Sp1g01820 K12890 - splicing factor, arginine/serine-rich 1/9 (SFRS1_9) ch1-1 + View
Solanum pennellii Sopen09g029910 SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. | SR1 | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | LOCATED IN: interchromatin granule, nuclear speck, nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch09 - View
Solanum pennellii Sopen06g003860 SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. | SR1 | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | LOCATED IN: interchromatin granule, nuclear speck, nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch06 - View
Solanum pennellii Sopen01g043320 Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. | SERINE-ARGININE PROTEIN 30 (ATSRP30) | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein Spenn-ch01 - View
Solanum tuberosum PGSC0003DMG400011402 Pre-mRNA-splicing factor SF2 ST4.03ch09 - View
Selenicereus undatus Hund05422 Scaffold_19641 - View
Trochodendron aralioides TAR365G0061 group16 + View
Trochodendron aralioides TAR636G3268 group1 + View
Trochodendron aralioides TAR633G0922 group2 - View
Theobroma cacao Thecc.01G299600 RNA-binding family protein Chromosome_1 - View
Theobroma cacao Thecc.05G313700 RNA-binding family protein Chromosome_5 - View
Tarenaya hassleriana THA.LOC104825971 serine/arginine-rich-splicing factor SR34 NW_010967707.1 + View
Tripterygium wilfordii TWI23G1288 NC_052239.1 + View
Tripterygium wilfordii TWI14G0715 NC_052249.1 - View
Vaccinium macrocarpon vmacro15005 Similar to SR34: Serine/arginine-rich-splicing factor SR34 (Arabidopsis thaliana OX%3D3702) chr7_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro02453 Similar to SR34: Serine/arginine-rich-splicing factor SR34 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1383G0638 CM024070.1 - View
Zea mays Zm00001eb285560 Zm00001e031418 ASF/SF2-like pre-mRNA splicing factor SRP31%3B ASF/SF2-like pre-mRNA splicing factor SRP31' 6 - View