Gene: Os07g0673500

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os07g0673500
  • Transcript Identifier Os07t0673500-01
  • Gene Type Coding gene
  • Location chr07 : 28470112-28473688 : negative

Gene Family Information

  • ID HOM05D001413
  • #Genes/#Species 444/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os07t0673500-01
  • MSU-ID LOC_Os07g47630.7
  • MSU-ID LOC_Os07g47630.8
  • MSU-ID LOC_Os07g47630.6
  • MSU-ID LOC_Os07g47630.3
  • MSU-ID LOC_Os07g47630.4
  • MSU-ID LOC_Os07g47630.1
  • MSU-ID LOC_Os07g47630.2
  • uniprot Q0D3Q1

Descriptions

  • Description Similar to cDNA clone:001-208-C08, full insert sequence (Fragment).
  • Description Similar to ASF/SF2-like pre-mRNA splicing factor SRP32''.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G02840
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G02840

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
IBA
GOA Databasenuclear speck
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G09140
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G09140
GO:0035061
ISO
PLAZA Integrative Orthologyinterchromatin granule AT1G02840
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G49430

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.2.6.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SR30/34)