Gene: Sopen09g029910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g029910
  • Transcript Identifier Sopen09g029910.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 78357101-78362586 : negative

Gene Family Information

  • ID HOM05D001413
  • #Genes/#Species 444/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g029910.1

Descriptions

  • Description SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. | SR1 | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | LOCATED IN: interchromatin granule, nuclear speck, nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein
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Functional Annotation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G02840
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G02840

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G02840
GO:0035061
ISO
PLAZA Integrative Orthologyinterchromatin granule AT1G02840

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.2.6.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SR30/34)