Gene: AT1G02840

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G02840
  • Transcript Identifier AT1G02840.1
  • Gene Type Coding gene
  • Location Chr1 : 626918-629583 : positive

Gene Family Information

  • ID HOM05D001413
  • #Genes/#Species 444/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G02840.1
  • symbol SR34
  • Alias ATSRP34,At-SR34,Serine/Arginine-Rich Protein Splicing Factor 34,SR1,SRP34
  • full_name Serine/Arginine-Rich Protein Splicing Factor 34
  • uniprot O22315

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description SR1; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: interchromatin granule, nuclear speck, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G02430.2); Has 35131 Blast hits to 21345 proteins in 1053 species: Archae - 12; Bacteria - 1352; Metazoa - 20795; Fungi - 3692; Plants - 3807; Viruses - 567; Other Eukaryotes - 4906 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
Gene OntologymRNA splicing, via spliceosome1
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS
Gene Ontologynucleus5
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005654
IEA
GOA Databasenucleoplasm
GO:0016607
IEA
GOA Databasenuclear speck
GO:0016607
IDA
IBA
Gene Ontologynuclear speck1 6
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0035061
IDA
Gene Ontologyinterchromatin granule7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.2.6.1 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP factor activities.splicing factor (SR30/34)