Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
PSO384G1506 NC_039368.1 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G9300 LG-3 + View
Acer truncatum Atru.chr1.244 chr1 - View
Actinidia chinensis Actinidia08630 Lachesis_group6 - View
Arabidopsis lyrata AL8G27830 scaffold_8 - View
Amaranthus hybridus Ah.07g205990 AmaHy_arrow1_Scaffold_7 - View
Aquilegia oxysepala Aqoxy7G00132 CHR07 - View
Aquilegia oxysepala Aqoxy5G04190 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.N493LC K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) arahy.Tifrunner.gnm1.Arahy.17 - View
Arabidopsis thaliana AT5G53180 polypyrimidine tract-binding protein 2 Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination. polypyrimidine tract-binding protein 2 (PTB2)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: pollen germination%2C regulation of RNA splicing%2C regulation of translation%3B LOCATED IN: nucleus%2C cytoplasmic mRNA processing body%2C cytoplasm%3B EXPRESSED IN: 31 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 (TAIR:AT3G01150.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). polypyrimidine tract-binding protein 2 (PTB2)%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C nucleic acid binding%3B INVOLVED IN: pollen germination%2C regulation of RNA splicing%2C regulation of translation%3B LOCATED IN: nucleus%2C cytoplasmic mRNA processing body%2C cytoplasm%3B EXPRESSED IN: 31 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: polypyrimidine tract-binding protein 1 (TAIR:AT3G01150.1)%3B Has 1611 Blast hits to 972 proteins in 138 species: Archae - 0%3B Bacteria - 10%3B Metazoa - 1107%3B Fungi - 42%3B Plants - 324%3B Viruses - 0%3B Other Eukaryotes - 128 (source: NCBI BLink). Chr5 - View
Brassica carinata BcaB05g22021 ChrB05 - View
Brassica napus A10p10690 A10 - View
Brassica rapa BraA10t43150Z A10 - View
Beta vulgaris EL10Ac3g05341 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr3_EL10_PGA_scaffold7 - View
Camellia sinensis var. sinensis CSS0027071 PREDICTED: uncharacterized protein LOC100244979 [Vitis vinifera] Chr7 + View
Cannabis sativa CANSAT21G1551 NC_044374.1 - View
Cicer arietinum L. Ca_16682_v3 Ca_LG5_v3 + View
Corylus avellana Haze_00118 Protein of unknown function 1 + View
Coffea canephora Cc02_g01820 Polypyrimidine tract-binding protein homolog 1 chr2 - View
Citrus clementina Ciclev10005489m.g scaffold_9 + View
Ceratophyllum demersum CDE10G0242 8 - View
Ceratophyllum demersum CDE10G1260 8 - View
Carpinus fangiana Cfa016368 Cfa06 + View
Cardamine hirsuta CARHR266250 polypyrimidine tract-binding protein 2 Chr8 - View
Carya illinoinensis CiPaw.05G257200 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr05 - View
Citrullus lanatus ClCG01G000550 Polypyrimidine tract binding protein, putative CG_Chr01 - View
Cucumis melo MELO3C005872.2 Polypyrimidine tract binding protein, putative chr09 + View
Carica papaya Cpa.g.sc3.57 supercontig_3 + View
Chenopodium quinoa AUR62006145 At5g53180: Polypyrimidine tract-binding protein homolog 2 C_Quinoa_Scaffold_1001 - View
Chenopodium quinoa AUR62019342 Protein of unknown function C_Quinoa_Scaffold_3107 + View
Capsella rubella Carub.0008s1338 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) scaffold_8 - View
Cucumis sativus L. CsaV3_5G000650 Polypyrimidine tract binding protein, putative chr5 - View
Daucus carota DCAR_010618 hypothetical protein DCARv2_Chr3 - View
Daucus carota DCAR_005046 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv28330 GWHABJS00000004 - View
Durio zibethinus Duzib068G0199 NW_019167838.1 - View
Durio zibethinus Duzib084G0975 NW_019167827.1 - View
Durio zibethinus Duzib205G2067 NW_019168381.1 + View
Erythranthe guttata Migut.F00238 scaffold_6 - View
Erythranthe guttata Migut.F01047 scaffold_6 - View
Eutrema salsugineum Thhalv10016110m.g K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) scaffold_2 + View
Fragaria x ananassa FAN01G3027 PTHR24012//PTHR24012:SF386 - FAMILY NOT NAMED // PHRAGMOPLASTIN INTERACTING PROTEIN 1 Fvb7-4 - View
Fragaria x ananassa FAN03G2436 K01945 - phosphoribosylamine--glycine ligase (purD) Fvb7-3 - View
Fragaria x ananassa FAN10G1818 K01945 - phosphoribosylamine--glycine ligase (purD) Fvb7-1 + View
Fragaria x ananassa FAN10G1776 Fvb7-1 + View
Fragaria x ananassa FAN06G4709 Fvb7-2 + View
Fragaria x ananassa FAN06G0673 Fvb7-2 + View
Fragaria vesca FvH4_7g31090 Fvb7 + View
Gossypium hirsutum Gohir.A12G251400 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) A12 - View
Gossypium hirsutum Gohir.D12G252200 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) D12 - View
Glycine max Glyma.04G238000 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Gm04 - View
Glycine max Glyma.14G159800 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Gm14 - View
Glycine max Glyma.06G125900 Gm06 + View
Gossypium raimondii Gorai.008G270300 Chr08 - View
Lupinus albus Lalb_Chr08g0240511 KOG0114//KOG4206 - Predicted RNA-binding protein (RRM superfamily) // Spliceosomal protein snRNP-U1A/U2B Lalb_Chr08 - View
Lupinus albus Lalb_Chr11g0066601 Lalb_Chr11 + View
Lotus japonicus Lj1g0000917 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) chr1 - View
Lonicera japonica Lj3A909T47 GWHAAZE00000003 - View
Lactuca sativa Lsat_1_v5_gn_9_57980 Lsat_1_v8_lg_9 - View
Magnolia biondii MBI06_g05040_MAGBIO AED:0.29 Chr06 + View
Malus domestica MD01G1215900 Protein of unknown function Chr01 + View
Malus domestica MD07G1285800 Protein of unknown function Chr07 + View
Manihot esculenta Manes.14G008196 Chromosome14 - View
Manihot esculenta Manes.06G157800 Chromosome06 + View
Medicago truncatula Medtr3g090955 polypyrimidine tract-binding-like protein, putative chr3 + View
Nelumbo nucifera Nn1g01835 chr1 - View
Nelumbo nucifera Nn3g19050 chr3 - View
Olea europaea Oeu041345.2 chr1 - View
Oryza sativa ssp. japonica Os05g0586700 Conserved hypothetical protein. chr05 + View
Petunia axillaris Peaxi162Scf00904g00127 polypyrimidine tract-binding protein 2 Peaxi162Scf00904 + View
Prunus persica Prupe.2G308000 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Pp02 + View
Pisum sativum Psat5g079400 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr5LG3 - View
Populus trichocarpa Potri.015G020800 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr15 - View
Populus trichocarpa Potri.012G031000 Chr12 + View
Phaseolus vulgaris Phvul.009G054151 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) Chr09 + View
Quercus lobata QL09p010723 9 - View
Rosa chinensis RcHm_v2.0_Chr1g0380171 RcHm_v2.0_Chr1 + View
Rhododendron simsii Rhsim03G0199900 chr03 + View
Rhododendron simsii Rhsim09G0204100 chr09 + View
Striga asiatica SGA_v2.0_scaffold192G40573 scaffold192 - View
Salvia bowleyana SalBow4G2102 GWHASIU00000008 - View
Salix brachista Sabra15G0015900 GWHAAZH00000015 - View
Salix brachista Sabra12G0020500 GWHAAZH00000012 - View
Sechium edule Sed0024329 LG01 - View
Sechium edule Sed0026580 LG05 - View
Solanum lycopersicum Solyc03g007320.4 Polypyrimidine tract-binding protein-like protein 1 (AHRD V3.3 *** A0A2G3CWX3_CAPCH) SL4.0ch03 + View
Schrenkiella parvula Sp6g15360 K14948 - polypyrimidine tract-binding protein 2 (PTBP2, NPTB) ch6-6 - View
Solanum tuberosum PGSC0003DMG400009074 Conserved gene of unknown function ST4.03ch03 + View
Selenicereus undatus Hund11690 Scaffold_33679 - View
Trochodendron aralioides TAR636G3288 group1 - View
Trochodendron aralioides TAR629G1462 group0 + View
Trochodendron aralioides TAR375G0325 group15 + View
Theobroma cacao Thecc.03G193600 General transcription factor IIF subunit 1 Chromosome_3 + View
Tarenaya hassleriana THA.LOC104800290 polypyrimidine tract-binding protein homolog 2-like isoform X1 NW_010969135.1 + View
Tarenaya hassleriana THA.LOC104811931 polypyrimidine tract-binding protein homolog 2 isoform X1 NW_010965372.1 - View
Trifolium pratense TPR.G17305 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI39G1278 NC_052250.1 + View
Tripterygium wilfordii TWI23G0688 NC_052239.1 - View
Vaccinium macrocarpon vmacro06564 Protein of unknown function chr2_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1309G2916 CM024072.1 + View