Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Lalb_Chr12g0201971 K11294 - nucleolin (NCL, NSR1) Lalb_Chr12 + View
Lalb_Chr23g0273421 K11294 - nucleolin (NCL, NSR1) Lalb_Chr23 + View
Lalb_Chr07g0183131 K11294 - nucleolin (NCL, NSR1) Lalb_Chr07 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G6050 LG-3 + View
Actinidia chinensis Actinidia08837 Lachesis_group2 - View
Actinidia chinensis Actinidia36762 Lachesis_group9 - View
Arabidopsis lyrata AL8G24270 scaffold_8 - View
Arabidopsis lyrata AL7G28420 scaffold_7 + View
Avicennia marina MSTRG.22961 ScioBoG_3703_HRSCAF_3719 + View
Avicennia marina MSTRG.23179 ScioBoG_3703_HRSCAF_3719 + View
Amaranthus hybridus Ah.15g095520 28 kDa ribonucleoprotein, chloroplastic (28RNP) AmaHy_arrow1_Scaffold_15 - View
Amaranthus hybridus Ah.08g218450 AmaHy_arrow1_Scaffold_8 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.H1JF6T K11294 - nucleolin (NCL, NSR1) arahy.Tifrunner.gnm1.Arahy.13 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.M41V37 K11294 - nucleolin (NCL, NSR1) arahy.Tifrunner.gnm1.Arahy.11 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.8J87PM K11294 - nucleolin (NCL, NSR1) arahy.Tifrunner.gnm1.Arahy.03 - View
Arabidopsis thaliana AT4G24770 31-kDa RNA binding protein Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. 31-kDa RNA binding protein (RBP31)%3B FUNCTIONS IN: RNA binding%2C poly(U) RNA binding%3B INVOLVED IN: RNA modification%2C RNA processing%2C innate immune response%3B LOCATED IN: thylakoid%2C chloroplast thylakoid membrane%2C chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 14 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1)%3B Has 997248 Blast hits to 498569 proteins in 22111 species: Archae - 21618%3B Bacteria - 606023%3B Metazoa - 186637%3B Fungi - 27654%3B Plants - 60055%3B Viruses - 71042%3B Other Eukaryotes - 24219 (source: NCBI BLink). Chr4 - View
Arabidopsis thaliana AT5G50250 chloroplast RNA-binding protein 31B Encodes a RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Supports editing of specific CP31A-dependent sites. chloroplast RNA-binding protein 31B (CP31B)%3B FUNCTIONS IN: RNA binding%2C poly(U) RNA binding%3B INVOLVED IN: RNA modification%2C innate immune response%3B LOCATED IN: chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: 31-kDa RNA binding protein (TAIR:AT4G24770.1)%3B Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 736%3B Fungi - 347%3B Plants - 385%3B Viruses - 0%3B Other Eukaryotes - 339 (source: NCBI BLink). Chr5 - View
Beta vulgaris EL10Ac7g18026 KOG0131 - Splicing factor 3b, subunit 4 Chr7_EL10_PGA_scaffold5 + View
Cicer arietinum L. Ca_16115_v3 Ca_LG5_v3 - View
Corylus avellana Haze_07626 Similar to CP31A: 31 kDa ribonucleoprotein, chloroplastic (Arabidopsis thaliana OX%3D3702) 4 + View
Coffea canephora Cc04_g10930 28 kDa ribonucleoprotein, chloroplastic chr4 - View
Citrus clementina Ciclev10020731m.g scaffold_3 + View
Ceratophyllum demersum CDE09G0892 7 + View
Cardamine hirsuta CARHR232150 RNA binding protein Chr7 - View
Carya illinoinensis CiPaw.11G015100 KOG0131 - Splicing factor 3b, subunit 4 Chr11 - View
Carya illinoinensis CiPaw.12G033100 KOG0131 - Splicing factor 3b, subunit 4 Chr12 + View
Citrullus lanatus ClCG06G017510 RNA-binding protein CG_Chr06 + View
Cucumis melo MELO3C026246.2 31 kDa ribonucleoprotein, chloroplastic chr02 + View
Carica papaya Cpa.g.sc4.13 supercontig_4 - View
Chenopodium quinoa AUR62022090 28 kDa ribonucleoprotein, chloroplastic C_Quinoa_Scaffold_4319 - View
Chenopodium quinoa AUR62001230 28 kDa ribonucleoprotein, chloroplastic C_Quinoa_Scaffold_2716 + View
Capsella rubella Carub.0007s1629 KOG0131 - Splicing factor 3b, subunit 4 scaffold_7 + View
Capsella rubella Carub.0008s1025 KOG0131 - Splicing factor 3b, subunit 4 scaffold_8 - View
Cucumis sativus L. CsaV3_1G000940 Ribonucleoprotein chr1 - View
Davidia involucrata Dinv33414 GWHABJS00000014 - View
Davidia involucrata Dinv11129 GWHABJS00000006 + View
Durio zibethinus Duzib084G0894 NW_019167827.1 + View
Durio zibethinus Duzib068G0433 NW_019167838.1 + View
Erigeron canadensis ECA246G2849 Conyza_canadensis_scaffold:8 + View
Erigeron canadensis ECA232G3221 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.B00177 Chr02 - View
Erythranthe guttata Migut.D02010 scaffold_4 - View
Erythranthe guttata Migut.O00192 scaffold_17 + View
Fragaria x ananassa FAN04G1028 KOG0131 - Splicing factor 3b, subunit 4 Fvb5-4 + View
Fragaria x ananassa FAN13G2846 KOG0131 - Splicing factor 3b, subunit 4 Fvb5-2 + View
Fragaria x ananassa FAN18G2801 KOG0131 - Splicing factor 3b, subunit 4 Fvb5-1 + View
Fragaria vesca FvH4_5g06660 KOG0131 - Splicing factor 3b, subunit 4 Fvb5 + View
Gossypium hirsutum Gohir.D07G059600 K11294 - nucleolin (NCL, NSR1) D07 - View
Gossypium hirsutum Gohir.D03G102200 K11294 - nucleolin (NCL, NSR1) D03 + View
Gossypium hirsutum Gohir.A07G055300 K11294 - nucleolin (NCL, NSR1) A07 - View
Glycine max Glyma.17G125700 K11294 - nucleolin (NCL, NSR1) Gm17 + View
Glycine max Glyma.05G043200 K11294 - nucleolin (NCL, NSR1) Gm05 + View
Glycine max Glyma.04G190100 K11294 - nucleolin (NCL, NSR1) Gm04 + View
Glycine max Glyma.06G175400 K11294 - nucleolin (NCL, NSR1) Gm06 - View
Gossypium raimondii Gorai.003G107700 Chr03 + View
Gossypium raimondii Gorai.001G063100 Chr01 - View
Hydrangea macrophylla Hma1.2p1_0046F.1_g027340 Hma1.2p1_0046F.1 + View
Lotus japonicus Lj4g0004340 K11294 - nucleolin (NCL, NSR1) chr4 + View
Lotus japonicus Lj1g0026820 K11294 - nucleolin (NCL, NSR1) chr1 - View
Lonicera japonica Lj5A133T93 GWHAAZE00000005 + View
Lonicera japonica Lj9A440T64 GWHAAZE00000009 - View
Lonicera japonica Lj9A471G29 GWHAAZE00000009 - View
Lonicera japonica Lj5C102T10 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_5_13821 Lsat_1_v8_lg_5 + View
Malus domestica MD06G1162000 chloroplast RNA-binding protein 31B Chr06 - View
Malus domestica MD14G1167800 chloroplast RNA-binding protein 31B Chr14 - View
Manihot esculenta Manes.14G057600 Chromosome14 - View
Manihot esculenta Manes.06G112000 Chromosome06 + View
Medicago truncatula Medtr3g075500 31 kDa ribonucleoprotein chr3 - View
Medicago truncatula Medtr4g104450 RNA recognition motif, a.k.a. RRM, RBD protein chr4 - View
Nelumbo nucifera Nn4g22540 chr4 - View
Nicotiana tabacum Nitab4.5_0000510g0160 Nucleotide-binding, alpha-beta plait, RNA recognition motif domain Nitab4.5_0000510 - View
Nicotiana tabacum Nitab4.5_0000025g0220 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000025 - View
Olea europaea Oeu045494.1 chr1 - View
Olea europaea Oeu023463.1 chr12 + View
Petunia axillaris Peaxi162Scf00089g01127 31-kDa RNA binding protein Peaxi162Scf00089 - View
Punica granatum PGR044G0612 NC_045134.1 + View
Punica granatum PGR083G2362 NC_045133.1 - View
Prunus persica Prupe.5G162300 KOG0131 - Splicing factor 3b, subunit 4 Pp05 - View
Populus trichocarpa Potri.012G090200 K11294 - nucleolin (NCL, NSR1) Chr12 + View
Populus trichocarpa Potri.015G086500 KOG0131 - Splicing factor 3b, subunit 4 Chr15 + View
Phaseolus vulgaris Phvul.009G171500 K11294 - nucleolin (NCL, NSR1) Chr09 - View
Phaseolus vulgaris Phvul.003G206700 K11294 - nucleolin (NCL, NSR1) Chr03 + View
Quercus lobata QL10p005992 10 - View
Rosa chinensis RcHm_v2.0_Chr7g0192001 RcHm_v2.0_Chr7 - View
Rhododendron simsii Rhsim08G0180200 chr08 + View
Salix brachista Sabra12G0065000 GWHAAZH00000012 + View
Salix brachista Sabra15G0109300 GWHAAZH00000015 + View
Sechium edule Sed0019431 LG12 + View
Sechium edule Sed0023054 LG08 - View
Solanum lycopersicum Solyc03g111840.3 RNA-binding protein (AHRD V3.3 *** Q40270_MESCR) SL4.0ch03 - View
Schrenkiella parvula Sp7g22750 KOG0131 - Splicing factor 3b, subunit 4 ch7-4 - View
Solanum pennellii Sopen03g030940 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) - Nicotiana sylvestris (Wood tobacco), Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 31-kDa RNA binding protein (RBP31) | FUNCTIONS IN: RNA binding, poly(U) RNA binding | INVOLVED IN: RNA modification, RNA processing, innate immune response | LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400015155 28 kDa ribonucleoprotein, chloroplastic ST4.03ch03 - View
Selenicereus undatus Hund05608 Scaffold_19641 + View
Trochodendron aralioides TAR622G0777 group8 + View
Theobroma cacao Thecc.03G118100 31-kDa RNA binding protein Chromosome_3 + View
Tripterygium wilfordii TWI14G0881 NC_052249.1 + View
Tripterygium wilfordii TWI39G0379 NC_052250.1 + View
Tripterygium wilfordii TWI23G0264 NC_052239.1 - View
Vaccinium macrocarpon vmacro16684 Similar to 28 kDa ribonucleoprotein, chloroplastic (Nicotiana sylvestris OX%3D4096) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1215G0101 CM024074.1 - View
Vigna mungo VMungo1309G2545 CM024072.1 + View
Vitis vinifera GSVIVG01007596001 chr17 + View