Gene: Solyc03g111840.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g111840.3
  • Transcript Identifier Solyc03g111840.3.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 56860574-56864381 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g111840.3.1
  • uniprot A0A3Q7FPR2
  • gene_id Solyc03g111840

Descriptions

  • Description RNA-binding protein (AHRD V3.3 *** Q40270_MESCR)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016553
ISO
PLAZA Integrative Orthologybase conversion or substitution editing AT4G24770
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT5G50250
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G24770
GO:0043489
ISO
PLAZA Integrative OrthologyRNA stabilization AT4G24770
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT4G24770
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT4G24770
GO:0009451
ISO
PLAZA Integrative OrthologyRNA modification AT5G50250

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008266
ISO
PLAZA Integrative Orthologypoly(U) RNA binding AT5G50250
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G50250
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G50250
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT4G24770
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT4G24770
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT5G50250
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT5G50250

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.11.2.2 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP31)