Gene: Sopen03g030940

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g030940
  • Transcript Identifier Sopen03g030940.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 66732415-66736251 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g030940.1

Descriptions

  • Description 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) - Nicotiana sylvestris (Wood tobacco), Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 31-kDa RNA binding protein (RBP31) | FUNCTIONS IN: RNA binding, poly(U) RNA binding | INVOLVED IN: RNA modification, RNA processing, innate immune response | LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009451
ISO
PLAZA Integrative OrthologyRNA modification AT5G50250
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT4G24770
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT4G24770
GO:0043489
ISO
PLAZA Integrative OrthologyRNA stabilization AT4G24770
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT4G24770
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT5G50250
GO:0016553
ISO
PLAZA Integrative Orthologybase conversion or substitution editing AT4G24770

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0008266
ISO
PLAZA Integrative Orthologypoly(U) RNA binding AT5G50250
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT4G24770
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G50250

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT5G50250
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT5G50250
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT4G24770
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT4G24770
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G50250

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.11.2.2 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP31)