Gene: AT4G24770

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G24770
  • Transcript Identifier AT4G24770.2
  • Gene Type Coding gene
  • Location Chr4 : 12766223-12767952 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G24770.2
  • symbol RBP31
  • Alias ATRBP31,ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD,ATRBP33,CP31
  • uniprot Q04836

Descriptions

  • Description 31-kDa RNA binding protein
  • Computational description 31-kDa RNA binding protein (RBP31); FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: RNA modification, RNA processing, innate immune response; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 997248 Blast hits to 498569 proteins in 22111 species: Archae - 21618; Bacteria - 606023; Metazoa - 186637; Fungi - 27654; Plants - 60055; Viruses - 71042; Other Eukaryotes - 24219 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
TAS
Gene OntologyRNA processing1
GO:1901259
IBA
Gene Ontologychloroplast rRNA processing2
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0045087
IDA
Gene Ontologyinnate immune response3
GO:0009451
IMP
Gene OntologyRNA modification4
GO:0009631
IMP
Gene Ontologycold acclimation5
GO:0016553
IMP
Gene Ontologybase conversion or substitution editing5
GO:0043489
IMP
Gene OntologyRNA stabilization5
GO:0009409
IMP
Gene Ontologyresponse to cold6

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
ISS
TAS
Gene OntologyRNA binding1 5 7
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding2 8 9
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008266
IDA
Gene Ontologypoly(U) RNA binding10

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope11
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast7 12
GO:0009535
IDA
GOA Databasechloroplast thylakoid membrane
GO:0009535
HDA
IBA
Gene Ontologychloroplast thylakoid membrane2 13
GO:0009579
IDA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid14
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
IDA, HDA
Gene Ontologychloroplast stroma5 15
GO:0005829
HDA
Gene Ontologycytosol16

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.11.2.2 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP31)