Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0013372 hypothetical protein VITISV_023400 [Vitis vinifera] Chr6 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr6.542 chr6 - View
Actinidia chinensis Actinidia38991 Lachesis_group2 + View
Actinidia chinensis Actinidia00173 Lachesis_group12 - View
Actinidia chinensis Actinidia26178 Lachesis_group7 - View
Avicennia marina MSTRG.16485 ScioBoG_19743_HRSCAF_19834 + View
Avicennia marina MSTRG.27868 ScioBoG_94932_HRSCAF_95134 - View
Aquilegia oxysepala Aqoxy6G00078 CHR06 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.1V6YFN PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 arahy.Tifrunner.gnm1.Arahy.04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.AXP3WA K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) arahy.Tifrunner.gnm1.Arahy.14 - View
Arabidopsis thaliana AT1G57770 FAD/NAD(P)-binding oxidoreductase family protein FAD/NAD(P)-binding oxidoreductase family protein%3B FUNCTIONS IN: oxidoreductase activity%3B LOCATED IN: chloroplast%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937)%3B BEST Arabidopsis thaliana protein match is: carotenoid isomerase (TAIR:AT1G06820.1)%3B Has 6263 Blast hits to 6155 proteins in 967 species: Archae - 159%3B Bacteria - 2901%3B Metazoa - 394%3B Fungi - 76%3B Plants - 350%3B Viruses - 0%3B Other Eukaryotes - 2383 (source: NCBI BLink). Chr1 + View
Amborella trichopoda ATR1136G103 AmTr_v1.0_scaffold00071 - View
Capsicum annuum CAN.G855.15 PGAv.1.6.scaffold855 - View
Cicer arietinum L. Ca_00041_v3 Ca_LG1_v3 - View
Corylus avellana Haze_10033 Similar to UPF3: Regulator of nonsense transcripts UPF3 (Arabidopsis thaliana OX%3D3702) 9 + View
Corylus avellana Haze_13907 Similar to UPF3: Regulator of nonsense transcripts UPF3 (Arabidopsis thaliana OX%3D3702) 5 - View
Coffea canephora Cc02_g23310 Putative Prolycopene isomerase, chloroplastic chr2 - View
Carya illinoinensis CiPaw.05G003800 K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) Chr05 + View
Carya illinoinensis CiPaw.06G174800 PTHR10668//PTHR10668:SF4 - PHYTOENE DEHYDROGENASE // FAD/NAD(P)-BINDING OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN Chr06 - View
Citrullus lanatus ClCG10G007140 Carotenoid isomerase 1 CG_Chr10 - View
Cucumis melo MELO3C016495.2 prolycopene isomerase, chloroplastic isoform X1 chr06 - View
Corchorus olitorius COL.COLO4_17710 Regulator of nonsense-mediated decay%2C UPF3 AWUE01016378.1 + View
Carica papaya Cpa.g.sc113.29 supercontig_113 + View
Capsella rubella Carub.0002s0679 PTHR10668//PTHR10668:SF4 - PHYTOENE DEHYDROGENASE // FAD/NAD(P)-BINDING OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN scaffold_2 - View
Cucumis sativus L. CsaV3_3G006460 Carotene isomerase chr3 - View
Daucus carota DCAR_006663 hypothetical protein DCARv2_Chr2 + View
Daucus carota DCAR_001700 carotenoid isomerase DCARv2_Chr1 - View
Davidia involucrata Dinv19424 GWHABJS00000002 + View
Davidia involucrata Dinv29603 GWHABJS00000005 - View
Durio zibethinus Duzib052G1145 NW_019167849.1 - View
Durio zibethinus Duzib132G1055 NW_019167915.1 + View
Durio zibethinus Duzib248G0405 NW_019168048.1 + View
Erigeron canadensis ECA236G4953 Conyza_canadensis_scaffold:3 + View
Eucalyptus grandis Eucgr.I02778 Chr09 - View
Erythranthe guttata Migut.N00848 scaffold_14 - View
Erythranthe guttata Migut.B00752 scaffold_2 + View
Eutrema salsugineum Thhalv10023380m.g 5.2.1.13 - Prolycopene isomerase / CRTISO scaffold_8 + View
Eutrema salsugineum Thhalv10007455m.g K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) scaffold_5 - View
Fragaria x ananassa FAN18G1334 PTHR10668:SF4 - FAD/NAD(P)-BINDING OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN Fvb5-1 + View
Fragaria vesca FvH4_5g32510 K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) Fvb5 - View
Gossypium hirsutum Gohir.D12G043600 K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) D12 - View
Gossypium hirsutum Gohir.A12G044600 K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) A12 - View
Gossypium hirsutum Gohir.A01G184800 PTHR10668//PTHR10668:SF4 - PHYTOENE DEHYDROGENASE // FAD/NAD(P)-BINDING OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN A01 + View
Gossypium hirsutum Gohir.A03G215600 PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 A03 - View
Gossypium hirsutum Gohir.D02G237100 PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 D02 - View
Glycine max Glyma.16G002300 PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 Gm16 + View
Glycine max Glyma.12G165900 PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 Gm12 + View
Gossypium raimondii Gorai.008G045900 Chr08 - View
Gossypium raimondii Gorai.005G265700 Chr05 - View
Gossypium raimondii Gorai.002G218000 Chr02 + View
Helianthus annuus HanXRQChr03g0067961 Putative regulator of nonsense-mediated decay, UPF3 HanXRQChr03 - View
Lupinus albus Lalb_Chr15g0090791 K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) Lalb_Chr15 - View
Lotus japonicus Lj6g0013339 PTHR13112//PTHR13112:SF0 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // FI21285P1 chr6 - View
Lonicera japonica Lj5C267G12 GWHAAZE00000005 - View
Lonicera japonica Lj9A298T75 GWHAAZE00000009 + View
Lactuca sativa Lsat_1_v5_gn_9_119700 Lsat_1_v8_lg_9 - View
Lactuca sativa Lsat_1_v5_gn_7_76780 5.2.1.13 - Prolycopene isomerase / CRTISO Lsat_1_v8_lg_7 - View
Magnolia biondii MBI03_g01214_MAGBIO AED:0.09 Chr03 + View
Malus domestica MD08G1216600 Smg-4/UPF3 family protein Chr08 + View
Malus domestica MD08G1243700 FAD/NAD(P)-binding oxidoreductase family protein Chr08 - View
Malus domestica MD15G1438000 Smg-4/UPF3 family protein Chr15 - View
Malus domestica MD15G1403800 Smg-4/UPF3 family protein Chr15 + View
Manihot esculenta Manes.07G025600 Chromosome07 - View
Manihot esculenta Manes.10G116400 Chromosome10 + View
Medicago truncatula Medtr2g005600 Smg-4/UPF3 family protein chr2 + View
Nicotiana tabacum Nitab4.5_0000787g0020 Nucleotide-binding, alpha-beta plait, Regulator of nonsense-mediated decay, UPF3 Nitab4.5_0000787 + View
Petunia axillaris Peaxi162Scf00011g01537 Smg-4/UPF3 family protein Peaxi162Scf00011 - View
Punica granatum PGR042G1417 NC_045130.1 + View
Prunus persica Prupe.1G581000 Pp01 - View
Prunus persica Prupe.1G550000 PTHR13112//PTHR13112:SF3 - UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN // SUBFAMILY NOT NAMED Pp01 + View
Pisum sativum Psat1g222920 Smg-4/UPF3 family chr1LG6 - View
Populus trichocarpa Potri.004G225800 K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) Chr04 - View
Populus trichocarpa Potri.019G077500 K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) Chr19 - View
Populus trichocarpa Potri.003G005700 K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) Chr03 + View
Phaseolus vulgaris Phvul.006G219800 Chr06 - View
Quercus lobata QL02p100897 CM012294 - View
Quercus lobata QL09p004825 9 + View
Rosa chinensis RcHm_v2.0_Chr7g0220531 RcHm_v2.0_Chr7 + View
Rhododendron simsii Rhsim11G0121900 chr11 + View
Salix brachista Sabra01G0171500 GWHAAZH00000001 - View
Salix brachista Sabra03G0002900 GWHAAZH00000003 + View
Solanum lycopersicum Solyc01g103420.4 Regulator of nonsense transcripts UPF3 (AHRD V3.3 *** A0A2I0X275_9ASPA) SL4.0ch01 + View
Schrenkiella parvula Sp2g05740 PTHR10668//PTHR10668:SF4 - PHYTOENE DEHYDROGENASE // FAD/NAD(P)-BINDING OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN ch2-2 + View
Solanum pennellii Sopen01g045770 Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) | UPF3 | FUNCTIONS IN: nucleotide binding | INVOLVED IN: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | LOCATED IN: cellular_component unknown | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Nucleotide-binding, alpha-beta plait , Regulator of nonsense-mediated decay, UPF3 Spenn-ch01 + View
Solanum tuberosum PGSC0003DMG400024884 Nonsense-mediated decay UPF3 ST4.03ch01 + View
Trochodendron aralioides TAR381G0284 group11 + View
Trochodendron aralioides TAR628G0621 group5 + View
Theobroma cacao Thecc.02G016800 Smg-4/UPF3 family protein Chromosome_2 + View
Tarenaya hassleriana THA.LOC104823701 prolycopene isomerase%2C chloroplastic isoform X1 NW_010966881.1 - View
Tarenaya hassleriana THA.LOC104815973 regulator of nonsense transcripts UPF3-like isoform X1 NW_010960187.1 + View
Trifolium pratense TPR.G2078 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI59G0266 NC_052248.1 + View
Vaccinium macrocarpon vmacro01707 Similar to CRTISO: Prolycopene isomerase, chloroplastic (Daucus carota OX%3D4039) chr1_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro19858 Similar to UPF3: Regulator of nonsense transcripts UPF3 (Arabidopsis thaliana OX%3D3702) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0540G0490 CM024075.1 + View
Vitis vinifera GSVIVG01023233001 chr12 - View