Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0045645 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D007093 9.5e-92 340.1 167 100.0
CSS0001682 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D007093 3.7e-51 205.3 252 50.0
CSS0001427 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D007093 4.8e-51 204.9 290 46.9
EL10Ac6g14763 Beta vulgaris HOM05D001829 ORTHO05D007093 8.2e-51 204.1 238 50.0
CSS0044870 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D007093 4.5e-49 198.4 273 48.0
Rhsim11G0122000 Rhododendron simsii HOM05D001829 ORTHO05D007093 1.0e-48 197.2 291 43.6
vmacro01707 Vaccinium macrocarpon HOM05D001829 ORTHO05D007093 1.7e-48 196.4 291 44.0
Actinidia00173 Actinidia chinensis HOM05D001829 ORTHO05D007093 8.4e-48 194.1 291 43.6
Hma1.2p1_0884F.1_g232380 Hydrangea macrophylla HOM05D001829 ORTHO05D007093 1.4e-47 193.4 291 43.3
Hma1.2p1_0884F.1_g232390 Hydrangea macrophylla HOM05D001829 ORTHO05D007093 1.4e-47 193.4 291 43.3
Potri.003G005800 Populus trichocarpa HOM05D001829 ORTHO05D007093 3.2e-47 192.2 291 43.6
Sabra03G0002900 Salix brachista HOM05D001829 ORTHO05D007093 3.2e-47 192.2 291 43.6
Dinv29603 Davidia involucrata HOM05D001829 ORTHO05D007093 9.3e-47 190.7 291 44.7
ECA236G4796 Erigeron canadensis HOM05D001829 ORTHO05D007093 4.6e-46 188.3 290 42.4
Aqoxy6G00078 Aquilegia oxysepala HOM05D001829 ORTHO05D007093 6.0e-46 188.0 291 41.2
MD08G1243700 Malus domestica HOM05D001829 ORTHO05D007093 6.0e-46 188.0 291 42.6
PSO782G2303 Papaver somniferum HOM05D001829 ORTHO05D007093 7.9e-46 187.6 291 42.3
PGR042G0783 Punica granatum HOM05D001829 ORTHO05D007093 7.9e-46 187.6 290 42.8
Hund19648 Selenicereus undatus HOM05D001829 ORTHO05D007093 7.9e-46 187.6 291 41.9
PSO170G4495 Papaver somniferum HOM05D001829 ORTHO05D007093 1.0e-45 187.2 291 42.3
TAR376G0250 Trochodendron aralioides HOM05D001829 ORTHO05D007093 1.3e-45 186.8 291 41.6
Haze_10034 Corylus avellana HOM05D001829 ORTHO05D007093 3.0e-45 185.7 291 42.6
ClCG10G007140 Citrullus lanatus HOM05D001829 ORTHO05D007093 3.9e-45 185.3 291 41.6
Lsat_1_v5_gn_7_76780 Lactuca sativa HOM05D001829 ORTHO05D007093 5.1e-45 184.9 291 41.2
Nn5g27484 Nelumbo nucifera HOM05D001829 ORTHO05D007093 5.1e-45 184.9 291 41.9
VMungo1215G2408 Vigna mungo HOM05D001829 ORTHO05D007093 5.1e-45 184.9 290 41.4
AUR62003301 Chenopodium quinoa HOM05D001829 ORTHO05D007093 6.7e-45 184.5 291 41.6
MELO3C016495.2 Cucumis melo HOM05D001829 ORTHO05D007093 6.7e-45 184.5 291 41.6
RcHm_v2.0_Chr7g0220531 Rosa chinensis HOM05D001829 ORTHO05D007093 6.7e-45 184.5 291 41.9
Cpa.g.sc113.30 Carica papaya HOM05D001829 ORTHO05D007093 8.7e-45 184.1 290 42.1
Glyma.07G273600 Glycine max HOM05D001829 ORTHO05D007093 8.7e-45 184.1 291 41.2
Cc02_g23310 Coffea canephora HOM05D001829 ORTHO05D007093 1.1e-44 183.7 291 43.0
Lalb_Chr07g0176781 Lupinus albus HOM05D001829 ORTHO05D007093 1.1e-44 183.7 292 42.1
PGSC0003DMG400025098 Solanum tuberosum HOM05D001829 ORTHO05D007093 1.1e-44 183.7 291 41.6
CsaV3_3G006460 Cucumis sativus L. HOM05D001829 ORTHO05D007093 1.5e-44 183.3 291 41.2
HanXRQChr06g0182781 Helianthus annuus HOM05D001829 ORTHO05D007093 1.5e-44 183.3 291 41.2
Peaxi162Scf00152g01537 Petunia axillaris HOM05D001829 ORTHO05D007093 1.5e-44 183.3 291 40.5
CANSAT35G1138 Cannabis sativa HOM05D001829 ORTHO05D007093 1.9e-44 183.0 291 42.6
AUR62016285 Chenopodium quinoa HOM05D001829 ORTHO05D007093 1.9e-44 183.0 291 41.2
Phvul.003G075100 Phaseolus vulgaris HOM05D001829 ORTHO05D007093 1.9e-44 183.0 290 41.4
Gorai.002G218000 Gossypium raimondii HOM05D001829 ORTHO05D007093 2.5e-44 182.6 292 40.8
Ca_13537_v3 Cicer arietinum L. HOM05D001829 ORTHO05D007093 4.3e-44 181.8 291 41.9
Migut.B00762 Erythranthe guttata HOM05D001829 ORTHO05D007093 4.3e-44 181.8 290 41.7
Lj4g0003814 Lotus japonicus HOM05D001829 ORTHO05D007093 4.3e-44 181.8 291 42.3
arahy.Tifrunner.gnm1.ann1.CR8E6T Arachis hypogaea HOM05D001829 ORTHO05D007093 5.7e-44 181.4 291 40.9
CSS0027469 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D007093 5.7e-44 181.4 164 63.4
CAN.G184.51 Capsicum annuum HOM05D001829 ORTHO05D007093 5.7e-44 181.4 291 40.9
Sopen05g005960 Solanum pennellii HOM05D001829 ORTHO05D007093 7.4e-44 181.0 291 41.2
COL.COLO4_17711 Corchorus olitorius HOM05D001829 ORTHO05D007093 9.7e-44 180.6 291 40.5
FvH4_5g28280 Fragaria vesca HOM05D001829 ORTHO05D007093 1.3e-43 180.3 291 40.5
Gohir.D01G175700 Gossypium hirsutum HOM05D001829 ORTHO05D007093 1.3e-43 180.3 291 39.9
SGA_v2.0_scaffold249G44937 Striga asiatica HOM05D001829 ORTHO05D007093 1.3e-43 180.3 300 40.3
Atru.chr6.542 Acer truncatum HOM05D001829 ORTHO05D007093 2.2e-43 179.5 290 41.4
CARHR054430 Cardamine hirsuta HOM05D001829 ORTHO05D007093 2.8e-43 179.1 290 41.4
Eucgr.G00236 Eucalyptus grandis HOM05D001829 ORTHO05D007093 2.8e-43 179.1 299 39.1
Gohir.A01G184800 Gossypium hirsutum HOM05D001829 ORTHO05D007093 2.8e-43 179.1 291 39.9
Medtr4g134780 Medicago truncatula HOM05D001829 ORTHO05D007093 2.8e-43 179.1 291 41.2
Psat4g000880 Pisum sativum HOM05D001829 ORTHO05D007093 2.8e-43 179.1 291 41.2
GSVIVG01023233001 Vitis vinifera HOM05D001829 ORTHO05D007093 2.8e-43 179.1 291 40.9
AT1G57770 Arabidopsis thaliana HOM05D001829 ORTHO05D007093 3.7e-43 178.7 291 40.9
MSTRG.16485 Avicennia marina HOM05D001829 ORTHO05D007093 3.7e-43 178.7 290 40.3
Sed0012355 Sechium edule HOM05D001829 ORTHO05D007093 3.7e-43 178.7 290 40.3
Sc12g0008710 Simmondsia chinensis HOM05D001829 ORTHO05D007093 3.7e-43 178.7 290 41.4
CiPaw.06G174800 Carya illinoinensis HOM05D001829 ORTHO05D007093 4.8e-43 178.3 291 40.9
arahy.Tifrunner.gnm1.ann1.Y9RVVK Arachis hypogaea HOM05D001829 ORTHO05D007093 6.3e-43 177.9 291 40.2
BcaC04g22089 Brassica carinata HOM05D001829 ORTHO05D007093 6.3e-43 177.9 292 40.8
A09p18810 Brassica napus HOM05D001829 ORTHO05D007093 6.3e-43 177.9 292 40.8
C09p23600 Brassica napus HOM05D001829 ORTHO05D007093 6.3e-43 177.9 292 40.8
Carub.0002s0679 Capsella rubella HOM05D001829 ORTHO05D007093 6.3e-43 177.9 290 40.7
TWI59G1485 Tripterygium wilfordii HOM05D001829 ORTHO05D007093 6.3e-43 177.9 291 41.6
BcaB07g31149 Brassica carinata HOM05D001829 ORTHO05D007093 8.2e-43 177.6 292 41.1
QL02p100897 Quercus lobata HOM05D001829 ORTHO05D007093 1.1e-42 177.2 291 41.2
Sp2g05740 Schrenkiella parvula HOM05D001829 ORTHO05D007093 1.1e-42 177.2 292 41.4
Manes.07G025600 Manihot esculenta HOM05D001829 ORTHO05D007093 1.4e-42 176.8 291 40.2
Ciclev10000689m.g Citrus clementina HOM05D001829 ORTHO05D007093 1.8e-42 176.4 290 40.3
DCAR_001700 Daucus carota HOM05D001829 ORTHO05D007093 1.8e-42 176.4 289 40.5
Thhalv10023380m.g Eutrema salsugineum HOM05D001829 ORTHO05D007093 2.4e-42 176.0 292 40.8
Thecc.02G017000 Theobroma cacao HOM05D001829 ORTHO05D007093 3.1e-42 175.6 291 40.2
TPR.G5984 Trifolium pratense HOM05D001829 ORTHO05D007093 3.1e-42 175.6 291 40.9
Aa31LG2G11200 Aethionema arabicum HOM05D001829 ORTHO05D007093 4.1e-42 175.3 290 40.3
CDE07G1970 Ceratophyllum demersum HOM05D001829 ORTHO05D007093 5.3e-42 174.9 290 38.6
FAN18G1334 Fragaria x ananassa HOM05D001829 ORTHO05D007093 9.0e-42 174.1 288 39.9
THA.LOC104823701 Tarenaya hassleriana HOM05D001829 ORTHO05D007093 9.0e-42 174.1 290 40.0
unitig_748.g8352 Utricularia gibba HOM05D001829 ORTHO05D007093 9.0e-42 174.1 290 40.3
SEGI_33958 Sequoiadendron giganteum HOM05D001829 ORTHO05D007093 2.0e-41 172.9 291 39.2
AL1G67520 Arabidopsis lyrata HOM05D001829 ORTHO05D007093 5.9e-41 171.4 291 39.2
Migut.B00679 Erythranthe guttata HOM05D001829 ORTHO05D007093 1.0e-40 170.6 290 41.4
arahy.Tifrunner.gnm1.ann1.A5KHVE Arachis hypogaea HOM05D001829 ORTHO05D007093 1.3e-40 170.2 291 38.5
arahy.Tifrunner.gnm1.ann1.QGX5EX Arachis hypogaea HOM05D001829 ORTHO05D007093 1.3e-40 170.2 291 38.5
Os03g0841900 Oryza sativa ssp. japonica HOM05D001829 ORTHO05D007093 2.9e-40 169.1 290 37.9
ATR1136G103 Amborella trichopoda HOM05D001829 ORTHO05D007093 3.8e-40 168.7 290 37.6
Nitab4.5_0000121g0180 Nicotiana tabacum HOM05D001829 ORTHO05D007093 3.8e-40 168.7 253 43.9
Zm00001eb210950 Zea mays HOM05D001829 ORTHO05D007093 7.2e-39 164.5 290 37.2
AagrBONN_evm.TU.Sc2ySwM_228.441 Anthoceros agrestis HOM05D001829 ORTHO05D007093 1.8e-37 159.8 293 36.9
CSS0046505 Camellia sinensis var. sinensis HOM05D001829 ORTHO05D007093 2.3e-37 159.5 247 45.7
HPP92_012687 Vanilla planifolia HOM05D001829 ORTHO05D007093 1.9e-36 156.4 289 36.7
HPP92_012700 Vanilla planifolia HOM05D001829 ORTHO05D007093 2.5e-36 156.0 289 36.7
Lj5C267G12 Lonicera japonica HOM05D001829 ORTHO05D007093 7.4e-36 154.5 247 42.5
Mapoly0102s0041 Marchantia polymorpha HOM05D001829 ORTHO05D007093 8.2e-35 151.0 289 35.6
Pp3c8_1640 Physcomitrium patens HOM05D001829 ORTHO05D007093 1.0e-32 144.1 292 33.6
SMO244G0002 Selaginella moellendorffii HOM05D001829 ORTHO05D007093 1.0e-32 144.1 291 34.0
Prupe.1G581000 Prunus persica HOM05D001829 ORTHO05D007093 2.5e-31 139.4 218 40.4
Nitab4.5_0008269g0010 Nicotiana tabacum HOM05D001829 ORTHO05D007093 5.5e-31 138.3 218 40.8
CBR_g6542 Chara braunii HOM05D001829 ORTHO05D007093 1.1e-28 130.6 289 32.9
Ciclev10002476m.g Citrus clementina HOM05D001829 ORTHO05D007093 1.3e-24 117.1 114 57.9
Solyc05g010180.4 Solanum lycopersicum HOM05D001829 ORTHO05D007093 1.9e-23 113.2 62 80.6
Glyma.17G001302 Glycine max HOM05D001829 ORTHO05D007093 4.2e-23 112.1 203 36.9
AUR62027155 Chenopodium quinoa HOM05D001829 ORTHO05D007093 5.5e-23 111.7 62 79.0
Ciclev10002670m.g Citrus clementina HOM05D001829 ORTHO05D007093 1.0e-21 107.5 113 54.9
Pp3c2_2830 Physcomitrium patens HOM05D001829 ORTHO05D007093 1.0e-21 107.5 295 27.8
PRCOL_00006678 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 4.8e-19 98.6 287 26.5
Cre16.g674950 Chlamydomonas reinhardtii HOM05D001829 ORTHO05D007093 3.8e-16 89.0 290 27.6
MCO12G341 Micromonas commoda HOM05D001829 ORTHO05D007093 6.5e-16 88.2 304 26.3
Cre09.g407200 Chlamydomonas reinhardtii HOM05D001829 ORTHO05D007093 2.5e-15 86.3 319 26.6
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 2.7e-14 82.8 295 26.8
PRCOL_00001338 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 4.0e-13 79.0 306 24.2
PRCOL_00004227 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 1.2e-12 77.4 299 26.4
MCO01G763 Micromonas commoda HOM05D001829 ORTHO05D007093 4.4e-12 75.5 301 25.9
Sc03g0004940 Simmondsia chinensis HOM05D001829 ORTHO05D007093 1.8e-10 70.1 94 47.9
Cc06_g06950 Coffea canephora HOM05D006126 ORTHO05D007792 5.5e-07 58.5 76 36.8
MCO01G655 Micromonas commoda HOM05D001829 ORTHO05D007093 7.2e-07 58.2 49 46.9
Ah.12g059600 Amaranthus hybridus HOM05D006126 ORTHO05D007792 1.2e-06 57.4 107 31.8
Hund10797 Selenicereus undatus HOM05D006126 ORTHO05D007792 1.2e-06 57.4 67 37.3
AUR62038430 Chenopodium quinoa HOM05D006126 ORTHO05D007792 1.6e-06 57.0 103 30.1
MELO3C009571.2 Cucumis melo HOM05D006126 ORTHO05D007792 2.1e-06 56.6 67 38.8
DCAR_013459 Daucus carota HOM05D006126 ORTHO05D007792 2.1e-06 56.6 67 35.8
SEGI_16934 Sequoiadendron giganteum HOM05D006126 ORTHO05D007792 2.1e-06 56.6 67 37.3
MCO16G681 Micromonas commoda HOM05D001829 ORTHO05D007093 2.7e-06 56.2 302 22.5
AUR62036324 Chenopodium quinoa HOM05D006126 ORTHO05D007792 3.6e-06 55.8 103 29.1
Eucgr.A02546 Eucalyptus grandis HOM05D006126 ORTHO05D007792 3.6e-06 55.8 67 34.3
MBI05_g40561_MAGBIO Magnolia biondii HOM05D006126 ORTHO05D007792 3.6e-06 55.8 67 35.8
Solyc10g081650.2 Solanum lycopersicum HOM05D006126 ORTHO05D007792 3.6e-06 55.8 76 32.9
Sopen10g032160 Solanum pennellii HOM05D006126 ORTHO05D007792 3.6e-06 55.8 76 32.9
PGSC0003DMG400028224 Solanum tuberosum HOM05D006126 ORTHO05D007792 3.6e-06 55.8 76 32.9
ClCG10G017990 Citrullus lanatus HOM05D006126 ORTHO05D007792 4.7e-06 55.5 67 37.3
CsaV3_3G038300 Cucumis sativus L. HOM05D006126 ORTHO05D007792 4.7e-06 55.5 67 37.3
CAN.G674.36 Capsicum annuum HOM05D006126 ORTHO05D007792 6.1e-06 55.1 76 32.9
Nitab4.5_0000721g0080 Nicotiana tabacum HOM05D006126 ORTHO05D007792 6.1e-06 55.1 76 32.9
Oeu063079.1 Olea europaea HOM05D006126 ORTHO05D007792 6.1e-06 55.1 165 27.9
Zm00001eb200170 Zea mays HOM05D006126 ORTHO05D007792 6.1e-06 55.1 74 35.1
Lsat_1_v5_gn_9_13960 Lactuca sativa HOM05D006126 ORTHO05D007792 8.0e-06 54.7 67 34.3
Lalb_Chr02g0154231 Lupinus albus HOM05D006126 ORTHO05D007792 8.0e-06 54.7 67 35.8
Nitab4.5_0004995g0010 Nicotiana tabacum HOM05D006126 ORTHO05D007792 8.0e-06 54.7 76 32.9
Sed0001019 Sechium edule HOM05D006126 ORTHO05D007792 8.0e-06 54.7 67 37.3
Zm00001eb114270 Zea mays HOM05D006126 ORTHO05D007792 8.0e-06 54.7 67 34.3


User provided reference genes

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