Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0047336 hypothetical protein VITISV_021289 [Vitis vinifera] Contig250 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG1G19880 LG-1 - View
Acer truncatum Atru.chr4.1702 chr4 - View
Actinidia chinensis Actinidia35864 Lachesis_group8 + View
Actinidia chinensis Actinidia33186 Lachesis_group0 + View
Arabidopsis lyrata AL1G14600 scaffold_1 - View
Aquilegia oxysepala Aqoxy2G03859 CHR02 - View
Arabidopsis thaliana AT1G04880 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain%3B FUNCTIONS IN: sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: intracellular%2C nucleus%3B EXPRESSED IN: 10 plant structures%3B EXPRESSED DURING: 7 growth stages%3B CONTAINS InterPro DOMAIN/s: High mobility group%2C superfamily (InterPro:IPR009071)%2C High mobility group%2C HMG1/HMG2 (InterPro:IPR000910)%2C ARID/BRIGHT DNA-binding domain (InterPro:IPR001606)%3B BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1)%3B Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 2269%3B Fungi - 308%3B Plants - 431%3B Viruses - 3%3B Other Eukaryotes - 429 (source: NCBI BLink). Chr1 - View
Brassica napus A10p03310 A10 - View
Brassica napus C05p03030 C05 - View
Brassica oleracea BolC5t29085H C5 - View
Brassica rapa BraA10t42607Z A10 - View
Capsicum annuum CAN.G1635.7 PGAv.1.6.scaffold1635 + View
Cannabis sativa CANSAT78G1324 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon NC_044376.1 - View
Corylus avellana Haze_11610 Similar to HMGB15: High mobility group B protein 15 (Arabidopsis thaliana OX%3D3702) 9 + View
Coffea canephora Cc03_g07860 Putative High mobility group B protein 10 chr3 + View
Citrus clementina Ciclev10005091m.g scaffold_9 + View
Carpinus fangiana Cfa014913 Cfa06 - View
Cardamine hirsuta CARHR004270 High mobility group family protein Chr1 - View
Carya illinoinensis CiPaw.01G121000 PTHR13711//PTHR13711:SF213 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // PROTEIN HMG-20 Chr01 - View
Citrullus lanatus ClCG06G007770 High mobility group protein B3 CG_Chr06 + View
Cucumis melo MELO3C020449.2 high mobility group B protein 15 chr05 + View
Chenopodium quinoa AUR62020824 HMGB15: High mobility group B protein 15 C_Quinoa_Scaffold_4257 + View
Chenopodium quinoa AUR62018594 HMGB15: High mobility group B protein 15 C_Quinoa_Scaffold_4077 - View
Capsella rubella Carub.0001s0412 PTHR13711:SF213 - PROTEIN HMG-20 scaffold_1 - View
Capsella rubella Carub.0004s1422 PTHR13711//PTHR13711:SF202 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 10-RELATED scaffold_4 - View
Cucumis sativus L. CsaV3_2G011520 high mobility group B protein 15 chr2 + View
Daucus carota DCAR_026613 hypothetical protein DCARv2_Chr8 - View
Daucus carota DCAR_024473 hypothetical protein DCARv2_Chr7 - View
Davidia involucrata Dinv19195 GWHABJS00000010 - View
Davidia involucrata Dinv27237 GWHABJS00000014 + View
Davidia involucrata Dinv38233 GWHABJS00000016 + View
Davidia involucrata Dinv12686 GWHABJS00000007 + View
Durio zibethinus Duzib268G0907 NW_019168270.1 - View
Durio zibethinus Duzib212G0740 NW_019168026.1 - View
Erigeron canadensis ECA248G3338 Conyza_canadensis_scaffold:9 - View
Eucalyptus grandis Eucgr.H00052 Chr08 - View
Erythranthe guttata Migut.G00695 scaffold_7 + View
Fragaria x ananassa FAN12G3417 PTHR13711:SF213 - PROTEIN HMG-20 Fvb4-3 + View
Fragaria x ananassa FAN22G0086 PTHR13711:SF213 - PROTEIN HMG-20 Fvb4-1 + View
Fragaria x ananassa FAN17G1455 PTHR13711//PTHR13711:SF202 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 10-RELATED Fvb4-2 - View
Fragaria x ananassa FAN07G2115 PTHR13711//PTHR13711:SF213 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // PROTEIN HMG-20 Fvb4-4 - View
Gossypium hirsutum Gohir.A03G094500 PTHR13711//PTHR13711:SF202 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 10-RELATED A03 + View
Gossypium hirsutum Gohir.D10G141600 PTHR13711//PTHR13711:SF202 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 10-RELATED D10 - View
Gossypium hirsutum Gohir.A10G124901 PTHR13711//PTHR13711:SF202 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // HIGH MOBILITY GROUP B PROTEIN 10-RELATED A10 + View
Gossypium raimondii Gorai.011G157600 Chr11 - View
Gossypium raimondii Gorai.005G130200 Chr05 - View
Helianthus annuus HanXRQChr14g0435981 Putative ARID DNA-binding domain; High mobility group box domain HanXRQChr14 + View
Lonicera japonica Lj6A553G29 GWHAAZE00000006 - View
Lactuca sativa Lsat_1_v5_gn_2_44980 Lsat_1_v8_lg_2 - View
Lactuca sativa Lsat_1_v5_gn_1_71820 PTHR13711:SF202 - HIGH MOBILITY GROUP B PROTEIN 10-RELATED Lsat_1_v8_lg_1 + View
Malus domestica MD04G1008800 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain Chr04 - View
Manihot esculenta Manes.03G147600 Chromosome03 - View
Manihot esculenta Manes.15G053800 Chromosome15 + View
Nelumbo nucifera Nn1g07879 chr1 + View
Olea europaea Oeu022371.1 scaffold199 + View
Petunia axillaris Peaxi162Scf00047g00519 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain Peaxi162Scf00047 - View
Punica granatum PGR142G3678 NC_045128.1 + View
Prunus persica Prupe.1G008100 Pp01 - View
Populus trichocarpa Potri.001G315200 PTHR13711:SF213 - PROTEIN HMG-20 Chr01 + View
Populus trichocarpa Potri.017G055200 PTHR13711:SF213 - PROTEIN HMG-20 Chr17 + View
Quercus lobata QL06p024828 6 + View
Quercus lobata QL09p053965 9 - View
Rosa chinensis RcHm_v2.0_Chr4g0415261 RcHm_v2.0_Chr4 + View
Rhododendron simsii Rhsim09G0056200 chr09 + View
Striga asiatica SGA_v2.0_scaffold57G20102 scaffold57 - View
Salvia bowleyana SalBow8G0560 GWHASIU00000004 - View
Salix brachista Sabra17G0046800 GWHAAZH00000017 + View
Salix brachista Sabra16G0199400 GWHAAZH00000016 + View
Simmondsia chinensis Sc13g0000190 GWHAASQ00000013 + View
Sechium edule Sed0002207 LG04 + View
Solanum lycopersicum Solyc09g091960.3 High mobility group B protein 15 (AHRD V3.3 *** A0A1U8FAJ0_CAPAN) SL4.0ch09 - View
Schrenkiella parvula Sp1g03720 PTHR13711//PTHR13711:SF213 - SWI/SNF-RELATED CHROMATIN BINDING PROTEIN // PROTEIN HMG-20 ch1-1 - View
Solanum pennellii Sopen09g034860 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: intracellular, nucleus | EXPRESSED IN: 10 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: High mobility group, superfamily , High mobility group, HMG1/HMG2 , ARID/BRIGHT DNA-binding domain | BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain Spenn-ch09 - View
Solanum tuberosum PGSC0003DMG400031288 Transcription factor ST4.03ch09 - View
Trochodendron aralioides TAR362G1235 group17 + View
Trochodendron aralioides TAR365G1158 group16 - View
Theobroma cacao Thecc.04G201600 HMG (high mobility group) box with ARID/BRIGHT DNA-binding domain-like protein Chromosome_4 + View
Tarenaya hassleriana THA.LOC104801030 high mobility group B protein 15 NW_010969548.1 - View
Tarenaya hassleriana THA.LOC104827380 high mobility group B protein 15-like NW_010967707.1 + View
Tripterygium wilfordii TWI73G1259 NC_052232.1 + View
Vaccinium macrocarpon vmacro00473 Similar to HMGB15: High mobility group B protein 15 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01021061001 chr5 + View