Gene: Sopen09g034860

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen09g034860
  • Transcript Identifier Sopen09g034860.1
  • Gene Type Coding gene
  • Location Spenn-ch09 : 82862662-82866115 : negative

Gene Family Information

  • ID HOM05D001261
  • #Genes/#Species 496/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen09g034860.1

Descriptions

  • Description HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription | LOCATED IN: intracellular, nucleus | EXPRESSED IN: 10 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: High mobility group, superfamily , High mobility group, HMG1/HMG2 , ARID/BRIGHT DNA-binding domain | BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009860
ISO
PLAZA Integrative Orthologypollen tube growth AT1G04880
GO:0019760
ISO
PLAZA Integrative Orthologyglucosinolate metabolic process AT1G04880
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT1G04880
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT1G04880

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G04880
GO:0008134
ISO
PLAZA Integrative Orthologytranscription factor binding AT1G04880
GO:0000400
ISO
PLAZA Integrative Orthologyfour-way junction DNA binding AT1G04880

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090406
ISO
PLAZA Integrative Orthologypollen tube AT1G04880

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001606 ARID DNA-binding domain
IPR036431 ARID DNA-binding domain superfamily
IPR036910 High mobility group box domain superfamily
IPR009071 High mobility group box domain
Mapman id Description
12.1.3.1 Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B)