Gene: AT1G04880

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G04880
  • Transcript Identifier AT1G04880.1
  • Gene Type Coding gene
  • Location Chr1 : 1376106-1378264 : negative

Gene Family Information

  • ID HOM05D001261
  • #Genes/#Species 496/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G04880.1
  • uniprot Q9MAT6

Descriptions

  • Description HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain-containing protein
  • Computational description HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1); Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0; Bacteria - 5; Metazoa - 2269; Fungi - 308; Plants - 431; Viruses - 3; Other Eukaryotes - 429 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1
GO:0009846
IMP
Gene Ontologypollen germination2
GO:0009860
IMP
Gene Ontologypollen tube growth2
GO:0019760
IMP
Gene Ontologyglucosinolate metabolic process3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
ISS
Gene OntologyDNA-binding transcription factor activity1
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding4
GO:0000400
IDA
Gene Ontologyfour-way junction DNA binding2
GO:0008134
IPI
Gene Ontologytranscription factor binding2
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0090406
IDA
Gene Ontologypollen tube2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001606 ARID DNA-binding domain
IPR036431 ARID DNA-binding domain superfamily
IPR036910 High mobility group box domain superfamily
IPR009071 High mobility group box domain
Mapman id Description
12.1.3.1 Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B)