Gene: vmacro00473

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro00473
  • Transcript Identifier vmacro00473-RA
  • Gene Type Coding gene
  • Location chr1_Vaccinium_macrocarpon_Stevens_v1 : 39604853-39612069 : positive

Gene Family Information

  • ID HOM05D001261
  • #Genes/#Species 496/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro00473_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to HMGB15: High mobility group B protein 15 (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009860
ISO
PLAZA Integrative Orthologypollen tube growth AT1G04880
GO:0019760
ISO
PLAZA Integrative Orthologyglucosinolate metabolic process AT1G04880
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT1G04880
GO:0009846
ISO
PLAZA Integrative Orthologypollen germination AT1G04880

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G04880
GO:0008134
ISO
PLAZA Integrative Orthologytranscription factor binding AT1G04880
GO:0000400
ISO
PLAZA Integrative Orthologyfour-way junction DNA binding AT1G04880

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090406
ISO
PLAZA Integrative Orthologypollen tube AT1G04880

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036431 ARID DNA-binding domain superfamily
IPR009071 High mobility group box domain
IPR001606 ARID DNA-binding domain
IPR036910 High mobility group box domain superfamily
Mapman id Description
12.1.3.1 Chromatin organisation.chromatin structure.DNA bending.architectural protein (HMG-B)