Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '496', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p08390' => 'bna', 'A05p17360' => 'bna', 'A05p36190' => 'bna', 'A05p36210' => 'bna', 'A05p36230' => 'bna', 'A05p36240' => 'bna', 'A05p36250' => 'bna', 'A05p36270' => 'bna', 'A06p00070' => 'bna', 'A07p41670' => 'bna', 'A08p36660' => 'bna', 'A09p67700' => 'bna', 'A10p03310' => 'bna', 'Aa31LG10G570' => 'aar', 'Aa31LG1G19880' => 'aar', 'Aa31LG4G6230' => 'aar', 'Aa31LG8G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3465' => 'aag', 'Actinidia03674' => 'ach', 'Actinidia15468' => 'ach', 'Actinidia17023' => 'ach', 'Actinidia33185' => 'ach', 'Actinidia33186' => 'ach', 'Actinidia35864' => 'ach', 'Ah.13g073330' => 'amhyb', 'Ah.13g078140' => 'amhyb', 'AL1G14600' => 'aly', 'AL2G36150' => 'aly', 'AL3G25180' => 'aly', 'AL3G25200' => 'aly', 'Aqoxy1G04297' => 'aox', 'Aqoxy2G02705' => 'aox', 'Aqoxy2G03859' => 'aox', 'Aqoxy5G01079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03HAKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5WUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P4JNJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9QP8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5DIHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFLF6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8R3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM4VCW' => 'arhy', 'AT1G04880' => 'ath', 'AT1G55650' => 'ath', 'AT1G76110' => 'ath', 'AT3G13350' => 'ath', 'ATR0661G320' => 'atr', 'ATR0693G224' => 'atr', 'ATR0751G203' => 'atr', 'ATR1145G108' => 'atr', 'Atru.chr13.200' => 'acertr', 'Atru.chr2.3895' => 'acertr', 'Atru.chr4.1702' => 'acertr', 'AUR62002429' => 'cqu', 'AUR62013853' => 'cqu', 'AUR62018594' => 'cqu', 'AUR62020824' => 'cqu', 'AUR62023759' => 'cqu', 'AUR62036747' => 'cqu', 'AUR62036749' => 'cqu', 'BcaB02g06895' => 'bca', 'BcaB02g10808' => 'bca', 'BcaB03g13467' => 'bca', 'BcaB06g25460' => 'bca', 'BcaB06g25461' => 'bca', 'BcaB06g25462' => 'bca', 'BcaB06g25463' => 'bca', 'BcaB06g25464' => 'bca', 'BcaB06g25465' => 'bca', 'BcaB06g25466' => 'bca', 'BcaB06g25467' => 'bca', 'BcaB06g25468' => 'bca', 'BcaB06g25469' => 'bca', 'BcaB07g33194' => 'bca', 'BcaB08g35798' => 'bca', 'BcaC02g09388' => 'bca', 'BcaC05g24433' => 'bca', 'BcaC05g29186' => 'bca', 'BcaC05g29187' => 'bca', 'BcaC07g36873' => 'bca', 'BcaC07g42156' => 'bca', 'BcaC08g43643' => 'bca', 'BcaC08g44208' => 'bca', 'BcaC08g47104' => 'bca', 'BcaC08g47291' => 'bca', 'BcaNung05157' => 'bca', 'BcaNung05159' => 'bca', 'BcaNung05160' => 'bca', 'BcaNung05161' => 'bca', 'BolC4t25792H' => 'bol', 'BolC5t29085H' => 'bol', 'BolC5t34121H' => 'bol', 'BolC5t34123H' => 'bol', 'BolC6t36142H' => 'bol', 'BolC6t36814H' => 'bol', 'BolC6t40044H' => 'bol', 'BolC8t46960H' => 'bol', 'BolC8t52735H' => 'bol', 'BraA04t16526Z' => 'bra', 'BraA05t20632Z' => 'bra', 'BraA05t22423Z' => 'bra', 'BraA05t22425Z' => 'bra', 'BraA05t22428Z' => 'bra', 'BraA06t23222Z' => 'bra', 'BraA07t31696Z' => 'bra', 'BraA08t35569Z' => 'bra', 'BraA09t42100Z' => 'bra', 'BraA10t42607Z' => 'bra', 'C04p42090' => 'bna', 'C05p03030' => 'bna', 'C05p54550' => 'bna', 'C05p54570' => 'bna', 'C06p10620' => 'bna', 'C06p16170' => 'bna', 'C06p50050' => 'bna', 'C08p01550' => 'bna', 'C08p52030' => 'bna', 'CAN.G1635.7' => 'can', 'CAN.G268.3' => 'can', 'CAN.G401.12' => 'can', 'CAN.G401.4' => 'can', 'CAN.G401.6' => 'can', 'CAN.G8.47' => 'can', 'CANSAT11G1516' => 'cansat', 'CANSAT25G2358' => 'cansat', 'CANSAT78G1324' => 'cansat', 'CARHR004270' => 'chi', 'CARHR069650' => 'chi', 'CARHR087960' => 'chi', 'Carub.0001s0412' => 'cru', 'Carub.0001s3629' => 'cru', 'Carub.0001s4417' => 'cru', 'Carub.0002s0846' => 'cru', 'Carub.0002s0851' => 'cru', 'Carub.0002s0854' => 'cru', 'Carub.0002s2299' => 'cru', 'Carub.0003s1273' => 'cru', 'Carub.0004s1422' => 'cru', 'Carub.0007s3214' => 'cru', 'Ca_11377_v3' => 'car', 'Ca_14139_v3' => 'car', 'Ca_15451_v3' => 'car', 'CBR_g48690' => 'cbr', 'Cc03_g07860' => 'ccan', 'Cc05_g15700' => 'ccan', 'Cc10_g01010' => 'ccan', 'CDE02G0773' => 'cde', 'CDE02G4389' => 'cde', 'CDE03G0487' => 'cde', 'CDE04G1419' => 'cde', 'CDE06G2760' => 'cde', 'CDE06G2769' => 'cde', 'Cfa014019' => 'cfa', 'Cfa014913' => 'cfa', 'Cfa016960' => 'cfa', 'Ciclev10001816m.g' => 'ccl', 'Ciclev10005091m.g' => 'ccl', 'Ciclev10008919m.g' => 'ccl', 'CiPaw.01G121000' => 'cil', 'CiPaw.02G066300' => 'cil', 'CiPaw.07G142500' => 'cil', 'CiPaw.09G129700' => 'cil', 'CiPaw.11G210600' => 'cil', 'CiPaw.12G142500' => 'cil', 'ClCG05G015360' => 'cla', 'ClCG06G007770' => 'cla', 'COL.COLO4_07788' => 'col', 'COL.COLO4_09888' => 'col', 'COL.COLO4_26067' => 'col', 'Cpa.g.sc1068.1' => 'cpa', 'Cpa.g.sc12.68' => 'cpa', 'Cpa.g.sc26.248' => 'cpa', 'Cre13.g571050' => 'cre', 'CsaV3_2G011520' => 'csa', 'CsaV3_4G037000' => 'csa', 'CSS0037068' => 'camsi', 'CSS0039401' => 'camsi', 'CSS0043696' => 'camsi', 'CSS0046638' => 'camsi', 'CSS0047336' => 'camsi', 'CSS0050103' => 'camsi', 'DCAR_013758' => 'dca', 'DCAR_017610' => 'dca', 'DCAR_024473' => 'dca', 'DCAR_026613' => 'dca', 'Dinv03680' => 'din', 'Dinv12686' => 'din', 'Dinv19195' => 'din', 'Dinv19644' => 'din', 'Dinv27237' => 'din', 'Dinv31906' => 'din', 'Dinv38233' => 'din', 'Dinv39562' => 'din', 'Dinv40915' => 'din', 'Duzib041G0438' => 'dzi', 'Duzib093G0420' => 'dzi', 'Duzib116G0121' => 'dzi', 'Duzib212G0740' => 'dzi', 'Duzib213G0274' => 'dzi', 'Duzib268G0395' => 'dzi', 'Duzib268G0907' => 'dzi', 'ECA232G0527' => 'eca', 'ECA238G1605' => 'eca', 'ECA240G2895' => 'eca', 'ECA248G3338' => 'eca', 'EL10Ac1g02053' => 'bvu', 'EL10Ac3g06122' => 'bvu', 'EL10Ac3g07478' => 'bvu', 'Eucgr.F01991' => 'egr', 'Eucgr.F03526' => 'egr', 'Eucgr.H00052' => 'egr', 'FAN07G2115' => 'fan', 'FAN11G1862' => 'fan', 'FAN12G3417' => 'fan', 'FAN15G0503' => 'fan', 'FAN16G2494' => 'fan', 'FAN17G1455' => 'fan', 'FAN20G1477' => 'fan', 'FAN21G2040' => 'fan', 'FAN22G0086' => 'fan', 'FAN25G3495' => 'fan', 'FAN27G0685' => 'fan', 'FvH4_3g41610' => 'fve', 'FvH4_4g16370' => 'fve', 'Glyma.04G020000' => 'gma', 'Glyma.04G113000' => 'gma', 'Glyma.06G321700' => 'gma', 'Glyma.10G294000' => 'gma', 'Glyma.10G294100' => 'gma', 'Glyma.20G243900' => 'gma', 'Gohir.A03G094500' => 'ghi', 'Gohir.A05G182100' => 'ghi', 'Gohir.A10G124901' => 'ghi', 'Gohir.A13G128500' => 'ghi', 'Gohir.D02G123900' => 'ghi', 'Gohir.D05G185100' => 'ghi', 'Gohir.D10G141600' => 'ghi', 'Gohir.D13G131900' => 'ghi', 'Gorai.002G194700' => 'gra', 'Gorai.005G130200' => 'gra', 'Gorai.009G190400' => 'gra', 'Gorai.011G157600' => 'gra', 'Gorai.013G147900' => 'gra', 'GSVIVG01008723001' => 'vvi', 'GSVIVG01014843001' => 'vvi', 'GSVIVG01021061001' => 'vvi', 'HanXRQChr03g0077881' => 'han', 'HanXRQChr04g0114861' => 'han', 'HanXRQChr14g0435981' => 'han', 'Haze_09915' => 'cav', 'Haze_11610' => 'cav', 'Haze_22726' => 'cav', 'Hma1.2p1_0383F.1_g140250' => 'hma', 'Hma1.2p1_0383F.1_g140260' => 'hma', 'Hma1.2p1_1407F.1_g281450' => 'hma', 'HPP92_003491' => 'vpl', 'HPP92_008114' => 'vpl', 'HPP92_009907' => 'vpl', 'HPP92_020464' => 'vpl', 'HPP92_026168' => 'vpl', 'HPP92_026889' => 'vpl', 'Hund05144' => 'sun', 'Hund22972' => 'sun', 'Lalb_Chr02g0144151' => 'lal', 'Lalb_Chr08g0246331' => 'lal', 'Lalb_Chr11g0061761' => 'lal', 'Lalb_Chr11g0061771' => 'lal', 'Lalb_Chr11g0072731' => 'lal', 'Lalb_Chr18g0048641' => 'lal', 'Lalb_Chr21g0307471' => 'lal', 'Lj1g0016144' => 'lja', 'Lj1g0016814' => 'lja', 'Lj1g0017531' => 'lja', 'Lj3g0005977' => 'lja', 'Lj4A16T126' => 'lonja', 'Lj5g0016874' => 'lja', 'Lj6A553G29' => 'lonja', 'Lj8A183T36' => 'lonja', 'Lsat_1_v5_gn_1_71820' => 'lsa', 'Lsat_1_v5_gn_2_44980' => 'lsa', 'Lsat_1_v5_gn_9_46720' => 'lsa', 'Lsat_1_v5_gn_9_88540' => 'lsa', 'Manes.03G147600' => 'mes', 'Manes.05G204800' => 'mes', 'Manes.15G053800' => 'mes', 'Manes.18G008500' => 'mes', 'Mapoly0043s0128' => 'mpo', 'MBI01_g25650_MAGBIO' => 'mbi', 'MBI03_g39993_MAGBIO' => 'mbi', 'MBI05_g05627_MAGBIO' => 'mbi', 'MBI05_g05629_MAGBIO' => 'mbi', 'MBI05_g24485_MAGBIO' => 'mbi', 'MBI08_g40331_MAGBIO' => 'mbi', 'MBI08_g42718_MAGBIO' => 'mbi', 'MBI09_g14588_MAGBIO' => 'mbi', 'MBI10_g22588_MAGBIO' => 'mbi', 'MBI12_g45469_MAGBIO' => 'mbi', 'MBI14_g29305_MAGBIO' => 'mbi', 'MBI14_g47062_MAGBIO' => 'mbi', 'MBI15_g44393_MAGBIO' => 'mbi', 'MBI16_g37640_MAGBIO' => 'mbi', 'MBI18_g09847_MAGBIO' => 'mbi', 'MBI19_g14784_MAGBIO' => 'mbi', 'MD03G1042900' => 'mdo', 'MD04G1008800' => 'mdo', 'MD08G1006400' => 'mdo', 'MD11G1045900' => 'mdo', 'MD13G1138800' => 'mdo', 'MD15G1005800' => 'mdo', 'Medtr1g116180' => 'mtr', 'Medtr3g009890' => 'mtr', 'Medtr3g114920' => 'mtr', 'Medtr7g005970' => 'mtr', 'MELO3C016999.2' => 'cme', 'MELO3C020449.2' => 'cme', 'MELO3C028458.2' => 'cme', 'Migut.C00909' => 'egut', 'Migut.G00695' => 'egut', 'Migut.H01714' => 'egut', 'MSTRG.13044' => 'ama', 'MSTRG.14524' => 'ama', 'Nitab4.5_0000498g0170' => 'nta', 'Nitab4.5_0000898g0060' => 'nta', 'Nitab4.5_0000898g0160' => 'nta', 'Nitab4.5_0002216g0010' => 'nta', 'Nitab4.5_0002353g0020' => 'nta', 'Nitab4.5_0003570g0010' => 'nta', 'Nitab4.5_0019106g0010' => 'nta', 'Nn1g07633' => 'nnu', 'Nn1g07879' => 'nnu', 'Nn3g17439' => 'nnu', 'Nn3g20036' => 'nnu', 'Nn5g30235' => 'nnu', 'Nn5g30869' => 'nnu', 'Nn6g31871' => 'nnu', 'Nn6g34418' => 'nnu', 'Oeu006262.2' => 'oeu', 'Oeu013804.1' => 'oeu', 'Oeu019804.1' => 'oeu', 'Oeu019807.1' => 'oeu', 'Oeu019814.1' => 'oeu', 'Oeu019815.1' => 'oeu', 'Oeu022371.1' => 'oeu', 'Oeu034575.1' => 'oeu', 'Oeu034576.1' => 'oeu', 'Oeu041363.1' => 'oeu', 'Oeu055360.1' => 'oeu', 'Oeu064068.1' => 'oeu', 'Os02g0469900' => 'osa', 'Peaxi162Scf00047g00519' => 'pax', 'Peaxi162Scf00064g00829' => 'pax', 'Peaxi162Scf15341g00003' => 'pax', 'PGR031G2500' => 'pgr', 'PGR083G2486' => 'pgr', 'PGR142G3678' => 'pgr', 'PGSC0003DMG400029327' => 'stu', 'PGSC0003DMG400031288' => 'stu', 'PGSC0003DMG401018896' => 'stu', 'PGSC0003DMG402018896' => 'stu', 'Phvul.005G004300' => 'pvu', 'Phvul.007G006000' => 'pvu', 'Phvul.007G006100' => 'pvu', 'Phvul.009G020700' => 'pvu', 'Potri.001G315200' => 'ptr', 'Potri.005G246700' => 'ptr', 'Potri.011G168800' => 'ptr', 'Potri.017G055200' => 'ptr', 'Pp3c1_33100' => 'ppa', 'Pp3c7_23660' => 'ppa', 'Prupe.1G008100' => 'ppe', 'Prupe.1G358300' => 'ppe', 'Prupe.6G035300' => 'ppe', 'Psat0s2083g0160' => 'psa', 'Psat0s2083g0240' => 'psa', 'Psat0s2228g0080' => 'psa', 'Psat3g107360' => 'psa', 'Psat5g011640' => 'psa', 'Psat5g231880' => 'psa', 'Psat6g240880' => 'psa', 'Psat6g240920' => 'psa', 'Psat7g039280' => 'psa', 'Psat7g043960' => 'psa', 'Psat7g192760' => 'psa', 'Psat7g192800' => 'psa', 'PSO017G7019' => 'pso', 'PSO063G2803' => 'pso', 'PSO063G5485' => 'pso', 'PSO170G1184' => 'pso', 'PSO210G5207' => 'pso', 'PSO782G5301' => 'pso', 'QL02p013344' => 'qlo', 'QL06p024828' => 'qlo', 'QL08p000529' => 'qlo', 'QL09p053965' => 'qlo', 'RcHm_v2.0_Chr4g0415261' => 'rch', 'RcHm_v2.0_Chr5g0074651' => 'rch', 'RcHm_v2.0_Chr6g0303791' => 'rch', 'Rhsim01G0255400' => 'rsi', 'Rhsim04G0007700' => 'rsi', 'Rhsim06G0010600' => 'rsi', 'Rhsim09G0056200' => 'rsi', 'Sabra05G0190700' => 'sbr', 'Sabra11G0137900' => 'sbr', 'Sabra16G0199400' => 'sbr', 'Sabra17G0046800' => 'sbr', 'Sabra17G0049000' => 'sbr', 'SalBow7G1352' => 'sbo', 'SalBow8G0560' => 'sbo', 'SalBow8G3132' => 'sbo', 'Sc03g0011770' => 'sci', 'Sc13g0000190' => 'sci', 'Sc26g0004500' => 'sci', 'Sed0002207' => 'sed', 'Sed0018827' => 'sed', 'Sed0026703' => 'sed', 'SEGI_03044' => 'sgi', 'SEGI_07905' => 'sgi', 'SEGI_08051' => 'sgi', 'SEGI_16568' => 'sgi', 'SEGI_20255' => 'sgi', 'SEGI_21670' => 'sgi', 'SEGI_22736' => 'sgi', 'SEGI_24820' => 'sgi', 'SEGI_28457' => 'sgi', 'SEGI_29019' => 'sgi', 'SEGI_34433' => 'sgi', 'SEGI_36133' => 'sgi', 'SEGI_37314' => 'sgi', 'SEGI_37984' => 'sgi', 'SEGI_38962' => 'sgi', 'SGA_v2.0_scaffold11G05960' => 'sas', 'SGA_v2.0_scaffold145G36109' => 'sas', 'SGA_v2.0_scaffold57G20102' => 'sas', 'SGA_v2.0_scaffold92G28174' => 'sas', 'SHI01078' => 'shi', 'SHI01084' => 'shi', 'SHI21549' => 'shi', 'SHI21553' => 'shi', 'SMO367G0512' => 'smo', 'SMO367G0741' => 'smo', 'Solyc01g011277.1' => 'sly', 'Solyc09g091960.3' => 'sly', 'Solyc12g016190.2' => 'sly', 'Solyc12g094440.2' => 'sly', 'Sopen09g034860' => 'spe', 'Sopen12g007980' => 'spe', 'Sopen12g031330' => 'spe', 'Sp1g03720' => 'spa', 'Sp1g41270' => 'spa', 'Sp3g11550' => 'spa', 'Sp4g15180' => 'spa', 'Sp5g31230' => 'spa', 'SpUn0748_0010' => 'spa', 'TAR362G1147' => 'tar', 'TAR362G1235' => 'tar', 'TAR365G1158' => 'tar', 'TAR627G0328' => 'tar', 'TAR628G0748' => 'tar', 'THA.LOC104801030' => 'tha', 'THA.LOC104810304' => 'tha', 'THA.LOC104811448' => 'tha', 'THA.LOC104822702' => 'tha', 'THA.LOC104827380' => 'tha', 'Thecc.04G201600' => 'tca', 'Thecc.04G201800' => 'tca', 'Thecc.04G203600' => 'tca', 'Thecc.07G001600' => 'tca', 'Thecc.08G053400' => 'tca', 'Thhalv10007631m.g' => 'esa', 'Thhalv10011675m.g' => 'esa', 'Thhalv10017702m.g' => 'esa', 'Thhalv10017860m.g' => 'esa', 'Thhalv10018826m.g' => 'esa', 'Thhalv10021143m.g' => 'esa', 'TPR.G10416' => 'tpr', 'TPR.G15603' => 'tpr', 'TPR.G16692' => 'tpr', 'TPR.G38136' => 'tpr', 'TWI09G0965' => 'twi', 'TWI09G1575' => 'twi', 'TWI38G2024' => 'twi', 'TWI39G1003' => 'twi', 'TWI56G0846' => 'twi', 'TWI73G1259' => 'twi', 'unitig_21.g20260' => 'ugi', 'unitig_46.g18041' => 'ugi', 'unitig_744.g24498' => 'ugi', 'unitig_747.g21678' => 'ugi', 'vmacro00473' => 'vma', 'vmacro09799' => 'vma', 'vmacro21843' => 'vma', 'VMungo0720G0565' => 'vmu', 'VMungo1080G0142' => 'vmu', 'VMungo1309G2014' => 'vmu', 'Zm00001eb203110' => 'zma', 'Zm00001eb240740' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001261', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001261' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '496', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001261' ) ), 'genes' => array( 'A04p08390' => 'bna', 'A05p17360' => 'bna', 'A05p36190' => 'bna', 'A05p36210' => 'bna', 'A05p36230' => 'bna', 'A05p36240' => 'bna', 'A05p36250' => 'bna', 'A05p36270' => 'bna', 'A06p00070' => 'bna', 'A07p41670' => 'bna', 'A08p36660' => 'bna', 'A09p67700' => 'bna', 'A10p03310' => 'bna', 'Aa31LG10G570' => 'aar', 'Aa31LG1G19880' => 'aar', 'Aa31LG4G6230' => 'aar', 'Aa31LG8G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3465' => 'aag', 'Actinidia03674' => 'ach', 'Actinidia15468' => 'ach', 'Actinidia17023' => 'ach', 'Actinidia33185' => 'ach', 'Actinidia33186' => 'ach', 'Actinidia35864' => 'ach', 'Ah.13g073330' => 'amhyb', 'Ah.13g078140' => 'amhyb', 'AL1G14600' => 'aly', 'AL2G36150' => 'aly', 'AL3G25180' => 'aly', 'AL3G25200' => 'aly', 'Aqoxy1G04297' => 'aox', 'Aqoxy2G02705' => 'aox', 'Aqoxy2G03859' => 'aox', 'Aqoxy5G01079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03HAKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5WUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P4JNJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9QP8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5DIHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFLF6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8R3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM4VCW' => 'arhy', 'AT1G04880' => 'ath', 'AT1G55650' => 'ath', 'AT1G76110' => 'ath', 'AT3G13350' => 'ath', 'ATR0661G320' => 'atr', 'ATR0693G224' => 'atr', 'ATR0751G203' => 'atr', 'ATR1145G108' => 'atr', 'Atru.chr13.200' => 'acertr', 'Atru.chr2.3895' => 'acertr', 'Atru.chr4.1702' => 'acertr', 'AUR62002429' => 'cqu', 'AUR62013853' => 'cqu', 'AUR62018594' => 'cqu', 'AUR62020824' => 'cqu', 'AUR62023759' => 'cqu', 'AUR62036747' => 'cqu', 'AUR62036749' => 'cqu', 'BcaB02g06895' => 'bca', 'BcaB02g10808' => 'bca', 'BcaB03g13467' => 'bca', 'BcaB06g25460' => 'bca', 'BcaB06g25461' => 'bca', 'BcaB06g25462' => 'bca', 'BcaB06g25463' => 'bca', 'BcaB06g25464' => 'bca', 'BcaB06g25465' => 'bca', 'BcaB06g25466' => 'bca', 'BcaB06g25467' => 'bca', 'BcaB06g25468' => 'bca', 'BcaB06g25469' => 'bca', 'BcaB07g33194' => 'bca', 'BcaB08g35798' => 'bca', 'BcaC02g09388' => 'bca', 'BcaC05g24433' => 'bca', 'BcaC05g29186' => 'bca', 'BcaC05g29187' => 'bca', 'BcaC07g36873' => 'bca', 'BcaC07g42156' => 'bca', 'BcaC08g43643' => 'bca', 'BcaC08g44208' => 'bca', 'BcaC08g47104' => 'bca', 'BcaC08g47291' => 'bca', 'BcaNung05157' => 'bca', 'BcaNung05159' => 'bca', 'BcaNung05160' => 'bca', 'BcaNung05161' => 'bca', 'BolC4t25792H' => 'bol', 'BolC5t29085H' => 'bol', 'BolC5t34121H' => 'bol', 'BolC5t34123H' => 'bol', 'BolC6t36142H' => 'bol', 'BolC6t36814H' => 'bol', 'BolC6t40044H' => 'bol', 'BolC8t46960H' => 'bol', 'BolC8t52735H' => 'bol', 'BraA04t16526Z' => 'bra', 'BraA05t20632Z' => 'bra', 'BraA05t22423Z' => 'bra', 'BraA05t22425Z' => 'bra', 'BraA05t22428Z' => 'bra', 'BraA06t23222Z' => 'bra', 'BraA07t31696Z' => 'bra', 'BraA08t35569Z' => 'bra', 'BraA09t42100Z' => 'bra', 'BraA10t42607Z' => 'bra', 'C04p42090' => 'bna', 'C05p03030' => 'bna', 'C05p54550' => 'bna', 'C05p54570' => 'bna', 'C06p10620' => 'bna', 'C06p16170' => 'bna', 'C06p50050' => 'bna', 'C08p01550' => 'bna', 'C08p52030' => 'bna', 'CAN.G1635.7' => 'can', 'CAN.G268.3' => 'can', 'CAN.G401.12' => 'can', 'CAN.G401.4' => 'can', 'CAN.G401.6' => 'can', 'CAN.G8.47' => 'can', 'CANSAT11G1516' => 'cansat', 'CANSAT25G2358' => 'cansat', 'CANSAT78G1324' => 'cansat', 'CARHR004270' => 'chi', 'CARHR069650' => 'chi', 'CARHR087960' => 'chi', 'Carub.0001s0412' => 'cru', 'Carub.0001s3629' => 'cru', 'Carub.0001s4417' => 'cru', 'Carub.0002s0846' => 'cru', 'Carub.0002s0851' => 'cru', 'Carub.0002s0854' => 'cru', 'Carub.0002s2299' => 'cru', 'Carub.0003s1273' => 'cru', 'Carub.0004s1422' => 'cru', 'Carub.0007s3214' => 'cru', 'Ca_11377_v3' => 'car', 'Ca_14139_v3' => 'car', 'Ca_15451_v3' => 'car', 'CBR_g48690' => 'cbr', 'Cc03_g07860' => 'ccan', 'Cc05_g15700' => 'ccan', 'Cc10_g01010' => 'ccan', 'CDE02G0773' => 'cde', 'CDE02G4389' => 'cde', 'CDE03G0487' => 'cde', 'CDE04G1419' => 'cde', 'CDE06G2760' => 'cde', 'CDE06G2769' => 'cde', 'Cfa014019' => 'cfa', 'Cfa014913' => 'cfa', 'Cfa016960' => 'cfa', 'Ciclev10001816m.g' => 'ccl', 'Ciclev10005091m.g' => 'ccl', 'Ciclev10008919m.g' => 'ccl', 'CiPaw.01G121000' => 'cil', 'CiPaw.02G066300' => 'cil', 'CiPaw.07G142500' => 'cil', 'CiPaw.09G129700' => 'cil', 'CiPaw.11G210600' => 'cil', 'CiPaw.12G142500' => 'cil', 'ClCG05G015360' => 'cla', 'ClCG06G007770' => 'cla', 'COL.COLO4_07788' => 'col', 'COL.COLO4_09888' => 'col', 'COL.COLO4_26067' => 'col', 'Cpa.g.sc1068.1' => 'cpa', 'Cpa.g.sc12.68' => 'cpa', 'Cpa.g.sc26.248' => 'cpa', 'Cre13.g571050' => 'cre', 'CsaV3_2G011520' => 'csa', 'CsaV3_4G037000' => 'csa', 'CSS0037068' => 'camsi', 'CSS0039401' => 'camsi', 'CSS0043696' => 'camsi', 'CSS0046638' => 'camsi', 'CSS0047336' => 'camsi', 'CSS0050103' => 'camsi', 'DCAR_013758' => 'dca', 'DCAR_017610' => 'dca', 'DCAR_024473' => 'dca', 'DCAR_026613' => 'dca', 'Dinv03680' => 'din', 'Dinv12686' => 'din', 'Dinv19195' => 'din', 'Dinv19644' => 'din', 'Dinv27237' => 'din', 'Dinv31906' => 'din', 'Dinv38233' => 'din', 'Dinv39562' => 'din', 'Dinv40915' => 'din', 'Duzib041G0438' => 'dzi', 'Duzib093G0420' => 'dzi', 'Duzib116G0121' => 'dzi', 'Duzib212G0740' => 'dzi', 'Duzib213G0274' => 'dzi', 'Duzib268G0395' => 'dzi', 'Duzib268G0907' => 'dzi', 'ECA232G0527' => 'eca', 'ECA238G1605' => 'eca', 'ECA240G2895' => 'eca', 'ECA248G3338' => 'eca', 'EL10Ac1g02053' => 'bvu', 'EL10Ac3g06122' => 'bvu', 'EL10Ac3g07478' => 'bvu', 'Eucgr.F01991' => 'egr', 'Eucgr.F03526' => 'egr', 'Eucgr.H00052' => 'egr', 'FAN07G2115' => 'fan', 'FAN11G1862' => 'fan', 'FAN12G3417' => 'fan', 'FAN15G0503' => 'fan', 'FAN16G2494' => 'fan', 'FAN17G1455' => 'fan', 'FAN20G1477' => 'fan', 'FAN21G2040' => 'fan', 'FAN22G0086' => 'fan', 'FAN25G3495' => 'fan', 'FAN27G0685' => 'fan', 'FvH4_3g41610' => 'fve', 'FvH4_4g16370' => 'fve', 'Glyma.04G020000' => 'gma', 'Glyma.04G113000' => 'gma', 'Glyma.06G321700' => 'gma', 'Glyma.10G294000' => 'gma', 'Glyma.10G294100' => 'gma', 'Glyma.20G243900' => 'gma', 'Gohir.A03G094500' => 'ghi', 'Gohir.A05G182100' => 'ghi', 'Gohir.A10G124901' => 'ghi', 'Gohir.A13G128500' => 'ghi', 'Gohir.D02G123900' => 'ghi', 'Gohir.D05G185100' => 'ghi', 'Gohir.D10G141600' => 'ghi', 'Gohir.D13G131900' => 'ghi', 'Gorai.002G194700' => 'gra', 'Gorai.005G130200' => 'gra', 'Gorai.009G190400' => 'gra', 'Gorai.011G157600' => 'gra', 'Gorai.013G147900' => 'gra', 'GSVIVG01008723001' => 'vvi', 'GSVIVG01014843001' => 'vvi', 'GSVIVG01021061001' => 'vvi', 'HanXRQChr03g0077881' => 'han', 'HanXRQChr04g0114861' => 'han', 'HanXRQChr14g0435981' => 'han', 'Haze_09915' => 'cav', 'Haze_11610' => 'cav', 'Haze_22726' => 'cav', 'Hma1.2p1_0383F.1_g140250' => 'hma', 'Hma1.2p1_0383F.1_g140260' => 'hma', 'Hma1.2p1_1407F.1_g281450' => 'hma', 'HPP92_003491' => 'vpl', 'HPP92_008114' => 'vpl', 'HPP92_009907' => 'vpl', 'HPP92_020464' => 'vpl', 'HPP92_026168' => 'vpl', 'HPP92_026889' => 'vpl', 'Hund05144' => 'sun', 'Hund22972' => 'sun', 'Lalb_Chr02g0144151' => 'lal', 'Lalb_Chr08g0246331' => 'lal', 'Lalb_Chr11g0061761' => 'lal', 'Lalb_Chr11g0061771' => 'lal', 'Lalb_Chr11g0072731' => 'lal', 'Lalb_Chr18g0048641' => 'lal', 'Lalb_Chr21g0307471' => 'lal', 'Lj1g0016144' => 'lja', 'Lj1g0016814' => 'lja', 'Lj1g0017531' => 'lja', 'Lj3g0005977' => 'lja', 'Lj4A16T126' => 'lonja', 'Lj5g0016874' => 'lja', 'Lj6A553G29' => 'lonja', 'Lj8A183T36' => 'lonja', 'Lsat_1_v5_gn_1_71820' => 'lsa', 'Lsat_1_v5_gn_2_44980' => 'lsa', 'Lsat_1_v5_gn_9_46720' => 'lsa', 'Lsat_1_v5_gn_9_88540' => 'lsa', 'Manes.03G147600' => 'mes', 'Manes.05G204800' => 'mes', 'Manes.15G053800' => 'mes', 'Manes.18G008500' => 'mes', 'Mapoly0043s0128' => 'mpo', 'MBI01_g25650_MAGBIO' => 'mbi', 'MBI03_g39993_MAGBIO' => 'mbi', 'MBI05_g05627_MAGBIO' => 'mbi', 'MBI05_g05629_MAGBIO' => 'mbi', 'MBI05_g24485_MAGBIO' => 'mbi', 'MBI08_g40331_MAGBIO' => 'mbi', 'MBI08_g42718_MAGBIO' => 'mbi', 'MBI09_g14588_MAGBIO' => 'mbi', 'MBI10_g22588_MAGBIO' => 'mbi', 'MBI12_g45469_MAGBIO' => 'mbi', 'MBI14_g29305_MAGBIO' => 'mbi', 'MBI14_g47062_MAGBIO' => 'mbi', 'MBI15_g44393_MAGBIO' => 'mbi', 'MBI16_g37640_MAGBIO' => 'mbi', 'MBI18_g09847_MAGBIO' => 'mbi', 'MBI19_g14784_MAGBIO' => 'mbi', 'MD03G1042900' => 'mdo', 'MD04G1008800' => 'mdo', 'MD08G1006400' => 'mdo', 'MD11G1045900' => 'mdo', 'MD13G1138800' => 'mdo', 'MD15G1005800' => 'mdo', 'Medtr1g116180' => 'mtr', 'Medtr3g009890' => 'mtr', 'Medtr3g114920' => 'mtr', 'Medtr7g005970' => 'mtr', 'MELO3C016999.2' => 'cme', 'MELO3C020449.2' => 'cme', 'MELO3C028458.2' => 'cme', 'Migut.C00909' => 'egut', 'Migut.G00695' => 'egut', 'Migut.H01714' => 'egut', 'MSTRG.13044' => 'ama', 'MSTRG.14524' => 'ama', 'Nitab4.5_0000498g0170' => 'nta', 'Nitab4.5_0000898g0060' => 'nta', 'Nitab4.5_0000898g0160' => 'nta', 'Nitab4.5_0002216g0010' => 'nta', 'Nitab4.5_0002353g0020' => 'nta', 'Nitab4.5_0003570g0010' => 'nta', 'Nitab4.5_0019106g0010' => 'nta', 'Nn1g07633' => 'nnu', 'Nn1g07879' => 'nnu', 'Nn3g17439' => 'nnu', 'Nn3g20036' => 'nnu', 'Nn5g30235' => 'nnu', 'Nn5g30869' => 'nnu', 'Nn6g31871' => 'nnu', 'Nn6g34418' => 'nnu', 'Oeu006262.2' => 'oeu', 'Oeu013804.1' => 'oeu', 'Oeu019804.1' => 'oeu', 'Oeu019807.1' => 'oeu', 'Oeu019814.1' => 'oeu', 'Oeu019815.1' => 'oeu', 'Oeu022371.1' => 'oeu', 'Oeu034575.1' => 'oeu', 'Oeu034576.1' => 'oeu', 'Oeu041363.1' => 'oeu', 'Oeu055360.1' => 'oeu', 'Oeu064068.1' => 'oeu', 'Os02g0469900' => 'osa', 'Peaxi162Scf00047g00519' => 'pax', 'Peaxi162Scf00064g00829' => 'pax', 'Peaxi162Scf15341g00003' => 'pax', 'PGR031G2500' => 'pgr', 'PGR083G2486' => 'pgr', 'PGR142G3678' => 'pgr', 'PGSC0003DMG400029327' => 'stu', 'PGSC0003DMG400031288' => 'stu', 'PGSC0003DMG401018896' => 'stu', 'PGSC0003DMG402018896' => 'stu', 'Phvul.005G004300' => 'pvu', 'Phvul.007G006000' => 'pvu', 'Phvul.007G006100' => 'pvu', 'Phvul.009G020700' => 'pvu', 'Potri.001G315200' => 'ptr', 'Potri.005G246700' => 'ptr', 'Potri.011G168800' => 'ptr', 'Potri.017G055200' => 'ptr', 'Pp3c1_33100' => 'ppa', 'Pp3c7_23660' => 'ppa', 'Prupe.1G008100' => 'ppe', 'Prupe.1G358300' => 'ppe', 'Prupe.6G035300' => 'ppe', 'Psat0s2083g0160' => 'psa', 'Psat0s2083g0240' => 'psa', 'Psat0s2228g0080' => 'psa', 'Psat3g107360' => 'psa', 'Psat5g011640' => 'psa', 'Psat5g231880' => 'psa', 'Psat6g240880' => 'psa', 'Psat6g240920' => 'psa', 'Psat7g039280' => 'psa', 'Psat7g043960' => 'psa', 'Psat7g192760' => 'psa', 'Psat7g192800' => 'psa', 'PSO017G7019' => 'pso', 'PSO063G2803' => 'pso', 'PSO063G5485' => 'pso', 'PSO170G1184' => 'pso', 'PSO210G5207' => 'pso', 'PSO782G5301' => 'pso', 'QL02p013344' => 'qlo', 'QL06p024828' => 'qlo', 'QL08p000529' => 'qlo', 'QL09p053965' => 'qlo', 'RcHm_v2.0_Chr4g0415261' => 'rch', 'RcHm_v2.0_Chr5g0074651' => 'rch', 'RcHm_v2.0_Chr6g0303791' => 'rch', 'Rhsim01G0255400' => 'rsi', 'Rhsim04G0007700' => 'rsi', 'Rhsim06G0010600' => 'rsi', 'Rhsim09G0056200' => 'rsi', 'Sabra05G0190700' => 'sbr', 'Sabra11G0137900' => 'sbr', 'Sabra16G0199400' => 'sbr', 'Sabra17G0046800' => 'sbr', 'Sabra17G0049000' => 'sbr', 'SalBow7G1352' => 'sbo', 'SalBow8G0560' => 'sbo', 'SalBow8G3132' => 'sbo', 'Sc03g0011770' => 'sci', 'Sc13g0000190' => 'sci', 'Sc26g0004500' => 'sci', 'Sed0002207' => 'sed', 'Sed0018827' => 'sed', 'Sed0026703' => 'sed', 'SEGI_03044' => 'sgi', 'SEGI_07905' => 'sgi', 'SEGI_08051' => 'sgi', 'SEGI_16568' => 'sgi', 'SEGI_20255' => 'sgi', 'SEGI_21670' => 'sgi', 'SEGI_22736' => 'sgi', 'SEGI_24820' => 'sgi', 'SEGI_28457' => 'sgi', 'SEGI_29019' => 'sgi', 'SEGI_34433' => 'sgi', 'SEGI_36133' => 'sgi', 'SEGI_37314' => 'sgi', 'SEGI_37984' => 'sgi', 'SEGI_38962' => 'sgi', 'SGA_v2.0_scaffold11G05960' => 'sas', 'SGA_v2.0_scaffold145G36109' => 'sas', 'SGA_v2.0_scaffold57G20102' => 'sas', 'SGA_v2.0_scaffold92G28174' => 'sas', 'SHI01078' => 'shi', 'SHI01084' => 'shi', 'SHI21549' => 'shi', 'SHI21553' => 'shi', 'SMO367G0512' => 'smo', 'SMO367G0741' => 'smo', 'Solyc01g011277.1' => 'sly', 'Solyc09g091960.3' => 'sly', 'Solyc12g016190.2' => 'sly', 'Solyc12g094440.2' => 'sly', 'Sopen09g034860' => 'spe', 'Sopen12g007980' => 'spe', 'Sopen12g031330' => 'spe', 'Sp1g03720' => 'spa', 'Sp1g41270' => 'spa', 'Sp3g11550' => 'spa', 'Sp4g15180' => 'spa', 'Sp5g31230' => 'spa', 'SpUn0748_0010' => 'spa', 'TAR362G1147' => 'tar', 'TAR362G1235' => 'tar', 'TAR365G1158' => 'tar', 'TAR627G0328' => 'tar', 'TAR628G0748' => 'tar', 'THA.LOC104801030' => 'tha', 'THA.LOC104810304' => 'tha', 'THA.LOC104811448' => 'tha', 'THA.LOC104822702' => 'tha', 'THA.LOC104827380' => 'tha', 'Thecc.04G201600' => 'tca', 'Thecc.04G201800' => 'tca', 'Thecc.04G203600' => 'tca', 'Thecc.07G001600' => 'tca', 'Thecc.08G053400' => 'tca', 'Thhalv10007631m.g' => 'esa', 'Thhalv10011675m.g' => 'esa', 'Thhalv10017702m.g' => 'esa', 'Thhalv10017860m.g' => 'esa', 'Thhalv10018826m.g' => 'esa', 'Thhalv10021143m.g' => 'esa', 'TPR.G10416' => 'tpr', 'TPR.G15603' => 'tpr', 'TPR.G16692' => 'tpr', 'TPR.G38136' => 'tpr', 'TWI09G0965' => 'twi', 'TWI09G1575' => 'twi', 'TWI38G2024' => 'twi', 'TWI39G1003' => 'twi', 'TWI56G0846' => 'twi', 'TWI73G1259' => 'twi', 'unitig_21.g20260' => 'ugi', 'unitig_46.g18041' => 'ugi', 'unitig_744.g24498' => 'ugi', 'unitig_747.g21678' => 'ugi', 'vmacro00473' => 'vma', 'vmacro09799' => 'vma', 'vmacro21843' => 'vma', 'VMungo0720G0565' => 'vmu', 'VMungo1080G0142' => 'vmu', 'VMungo1309G2014' => 'vmu', 'Zm00001eb203110' => 'zma', 'Zm00001eb240740' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001261' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001261' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001261' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001261' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '496', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p08390' => 'bna', 'A05p17360' => 'bna', 'A05p36190' => 'bna', 'A05p36210' => 'bna', 'A05p36230' => 'bna', 'A05p36240' => 'bna', 'A05p36250' => 'bna', 'A05p36270' => 'bna', 'A06p00070' => 'bna', 'A07p41670' => 'bna', 'A08p36660' => 'bna', 'A09p67700' => 'bna', 'A10p03310' => 'bna', 'Aa31LG10G570' => 'aar', 'Aa31LG1G19880' => 'aar', 'Aa31LG4G6230' => 'aar', 'Aa31LG8G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3465' => 'aag', 'Actinidia03674' => 'ach', 'Actinidia15468' => 'ach', 'Actinidia17023' => 'ach', 'Actinidia33185' => 'ach', 'Actinidia33186' => 'ach', 'Actinidia35864' => 'ach', 'Ah.13g073330' => 'amhyb', 'Ah.13g078140' => 'amhyb', 'AL1G14600' => 'aly', 'AL2G36150' => 'aly', 'AL3G25180' => 'aly', 'AL3G25200' => 'aly', 'Aqoxy1G04297' => 'aox', 'Aqoxy2G02705' => 'aox', 'Aqoxy2G03859' => 'aox', 'Aqoxy5G01079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03HAKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5WUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P4JNJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9QP8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5DIHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFLF6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8R3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM4VCW' => 'arhy', 'AT1G04880' => 'ath', 'AT1G55650' => 'ath', 'AT1G76110' => 'ath', 'AT3G13350' => 'ath', 'ATR0661G320' => 'atr', 'ATR0693G224' => 'atr', 'ATR0751G203' => 'atr', 'ATR1145G108' => 'atr', 'Atru.chr13.200' => 'acertr', 'Atru.chr2.3895' => 'acertr', 'Atru.chr4.1702' => 'acertr', 'AUR62002429' => 'cqu', 'AUR62013853' => 'cqu', 'AUR62018594' => 'cqu', 'AUR62020824' => 'cqu', 'AUR62023759' => 'cqu', 'AUR62036747' => 'cqu', 'AUR62036749' => 'cqu', 'BcaB02g06895' => 'bca', 'BcaB02g10808' => 'bca', 'BcaB03g13467' => 'bca', 'BcaB06g25460' => 'bca', 'BcaB06g25461' => 'bca', 'BcaB06g25462' => 'bca', 'BcaB06g25463' => 'bca', 'BcaB06g25464' => 'bca', 'BcaB06g25465' => 'bca', 'BcaB06g25466' => 'bca', 'BcaB06g25467' => 'bca', 'BcaB06g25468' => 'bca', 'BcaB06g25469' => 'bca', 'BcaB07g33194' => 'bca', 'BcaB08g35798' => 'bca', 'BcaC02g09388' => 'bca', 'BcaC05g24433' => 'bca', 'BcaC05g29186' => 'bca', 'BcaC05g29187' => 'bca', 'BcaC07g36873' => 'bca', 'BcaC07g42156' => 'bca', 'BcaC08g43643' => 'bca', 'BcaC08g44208' => 'bca', 'BcaC08g47104' => 'bca', 'BcaC08g47291' => 'bca', 'BcaNung05157' => 'bca', 'BcaNung05159' => 'bca', 'BcaNung05160' => 'bca', 'BcaNung05161' => 'bca', 'BolC4t25792H' => 'bol', 'BolC5t29085H' => 'bol', 'BolC5t34121H' => 'bol', 'BolC5t34123H' => 'bol', 'BolC6t36142H' => 'bol', 'BolC6t36814H' => 'bol', 'BolC6t40044H' => 'bol', 'BolC8t46960H' => 'bol', 'BolC8t52735H' => 'bol', 'BraA04t16526Z' => 'bra', 'BraA05t20632Z' => 'bra', 'BraA05t22423Z' => 'bra', 'BraA05t22425Z' => 'bra', 'BraA05t22428Z' => 'bra', 'BraA06t23222Z' => 'bra', 'BraA07t31696Z' => 'bra', 'BraA08t35569Z' => 'bra', 'BraA09t42100Z' => 'bra', 'BraA10t42607Z' => 'bra', 'C04p42090' => 'bna', 'C05p03030' => 'bna', 'C05p54550' => 'bna', 'C05p54570' => 'bna', 'C06p10620' => 'bna', 'C06p16170' => 'bna', 'C06p50050' => 'bna', 'C08p01550' => 'bna', 'C08p52030' => 'bna', 'CAN.G1635.7' => 'can', 'CAN.G268.3' => 'can', 'CAN.G401.12' => 'can', 'CAN.G401.4' => 'can', 'CAN.G401.6' => 'can', 'CAN.G8.47' => 'can', 'CANSAT11G1516' => 'cansat', 'CANSAT25G2358' => 'cansat', 'CANSAT78G1324' => 'cansat', 'CARHR004270' => 'chi', 'CARHR069650' => 'chi', 'CARHR087960' => 'chi', 'Carub.0001s0412' => 'cru', 'Carub.0001s3629' => 'cru', 'Carub.0001s4417' => 'cru', 'Carub.0002s0846' => 'cru', 'Carub.0002s0851' => 'cru', 'Carub.0002s0854' => 'cru', 'Carub.0002s2299' => 'cru', 'Carub.0003s1273' => 'cru', 'Carub.0004s1422' => 'cru', 'Carub.0007s3214' => 'cru', 'Ca_11377_v3' => 'car', 'Ca_14139_v3' => 'car', 'Ca_15451_v3' => 'car', 'CBR_g48690' => 'cbr', 'Cc03_g07860' => 'ccan', 'Cc05_g15700' => 'ccan', 'Cc10_g01010' => 'ccan', 'CDE02G0773' => 'cde', 'CDE02G4389' => 'cde', 'CDE03G0487' => 'cde', 'CDE04G1419' => 'cde', 'CDE06G2760' => 'cde', 'CDE06G2769' => 'cde', 'Cfa014019' => 'cfa', 'Cfa014913' => 'cfa', 'Cfa016960' => 'cfa', 'Ciclev10001816m.g' => 'ccl', 'Ciclev10005091m.g' => 'ccl', 'Ciclev10008919m.g' => 'ccl', 'CiPaw.01G121000' => 'cil', 'CiPaw.02G066300' => 'cil', 'CiPaw.07G142500' => 'cil', 'CiPaw.09G129700' => 'cil', 'CiPaw.11G210600' => 'cil', 'CiPaw.12G142500' => 'cil', 'ClCG05G015360' => 'cla', 'ClCG06G007770' => 'cla', 'COL.COLO4_07788' => 'col', 'COL.COLO4_09888' => 'col', 'COL.COLO4_26067' => 'col', 'Cpa.g.sc1068.1' => 'cpa', 'Cpa.g.sc12.68' => 'cpa', 'Cpa.g.sc26.248' => 'cpa', 'Cre13.g571050' => 'cre', 'CsaV3_2G011520' => 'csa', 'CsaV3_4G037000' => 'csa', 'CSS0037068' => 'camsi', 'CSS0039401' => 'camsi', 'CSS0043696' => 'camsi', 'CSS0046638' => 'camsi', 'CSS0047336' => 'camsi', 'CSS0050103' => 'camsi', 'DCAR_013758' => 'dca', 'DCAR_017610' => 'dca', 'DCAR_024473' => 'dca', 'DCAR_026613' => 'dca', 'Dinv03680' => 'din', 'Dinv12686' => 'din', 'Dinv19195' => 'din', 'Dinv19644' => 'din', 'Dinv27237' => 'din', 'Dinv31906' => 'din', 'Dinv38233' => 'din', 'Dinv39562' => 'din', 'Dinv40915' => 'din', 'Duzib041G0438' => 'dzi', 'Duzib093G0420' => 'dzi', 'Duzib116G0121' => 'dzi', 'Duzib212G0740' => 'dzi', 'Duzib213G0274' => 'dzi', 'Duzib268G0395' => 'dzi', 'Duzib268G0907' => 'dzi', 'ECA232G0527' => 'eca', 'ECA238G1605' => 'eca', 'ECA240G2895' => 'eca', 'ECA248G3338' => 'eca', 'EL10Ac1g02053' => 'bvu', 'EL10Ac3g06122' => 'bvu', 'EL10Ac3g07478' => 'bvu', 'Eucgr.F01991' => 'egr', 'Eucgr.F03526' => 'egr', 'Eucgr.H00052' => 'egr', 'FAN07G2115' => 'fan', 'FAN11G1862' => 'fan', 'FAN12G3417' => 'fan', 'FAN15G0503' => 'fan', 'FAN16G2494' => 'fan', 'FAN17G1455' => 'fan', 'FAN20G1477' => 'fan', 'FAN21G2040' => 'fan', 'FAN22G0086' => 'fan', 'FAN25G3495' => 'fan', 'FAN27G0685' => 'fan', 'FvH4_3g41610' => 'fve', 'FvH4_4g16370' => 'fve', 'Glyma.04G020000' => 'gma', 'Glyma.04G113000' => 'gma', 'Glyma.06G321700' => 'gma', 'Glyma.10G294000' => 'gma', 'Glyma.10G294100' => 'gma', 'Glyma.20G243900' => 'gma', 'Gohir.A03G094500' => 'ghi', 'Gohir.A05G182100' => 'ghi', 'Gohir.A10G124901' => 'ghi', 'Gohir.A13G128500' => 'ghi', 'Gohir.D02G123900' => 'ghi', 'Gohir.D05G185100' => 'ghi', 'Gohir.D10G141600' => 'ghi', 'Gohir.D13G131900' => 'ghi', 'Gorai.002G194700' => 'gra', 'Gorai.005G130200' => 'gra', 'Gorai.009G190400' => 'gra', 'Gorai.011G157600' => 'gra', 'Gorai.013G147900' => 'gra', 'GSVIVG01008723001' => 'vvi', 'GSVIVG01014843001' => 'vvi', 'GSVIVG01021061001' => 'vvi', 'HanXRQChr03g0077881' => 'han', 'HanXRQChr04g0114861' => 'han', 'HanXRQChr14g0435981' => 'han', 'Haze_09915' => 'cav', 'Haze_11610' => 'cav', 'Haze_22726' => 'cav', 'Hma1.2p1_0383F.1_g140250' => 'hma', 'Hma1.2p1_0383F.1_g140260' => 'hma', 'Hma1.2p1_1407F.1_g281450' => 'hma', 'HPP92_003491' => 'vpl', 'HPP92_008114' => 'vpl', 'HPP92_009907' => 'vpl', 'HPP92_020464' => 'vpl', 'HPP92_026168' => 'vpl', 'HPP92_026889' => 'vpl', 'Hund05144' => 'sun', 'Hund22972' => 'sun', 'Lalb_Chr02g0144151' => 'lal', 'Lalb_Chr08g0246331' => 'lal', 'Lalb_Chr11g0061761' => 'lal', 'Lalb_Chr11g0061771' => 'lal', 'Lalb_Chr11g0072731' => 'lal', 'Lalb_Chr18g0048641' => 'lal', 'Lalb_Chr21g0307471' => 'lal', 'Lj1g0016144' => 'lja', 'Lj1g0016814' => 'lja', 'Lj1g0017531' => 'lja', 'Lj3g0005977' => 'lja', 'Lj4A16T126' => 'lonja', 'Lj5g0016874' => 'lja', 'Lj6A553G29' => 'lonja', 'Lj8A183T36' => 'lonja', 'Lsat_1_v5_gn_1_71820' => 'lsa', 'Lsat_1_v5_gn_2_44980' => 'lsa', 'Lsat_1_v5_gn_9_46720' => 'lsa', 'Lsat_1_v5_gn_9_88540' => 'lsa', 'Manes.03G147600' => 'mes', 'Manes.05G204800' => 'mes', 'Manes.15G053800' => 'mes', 'Manes.18G008500' => 'mes', 'Mapoly0043s0128' => 'mpo', 'MBI01_g25650_MAGBIO' => 'mbi', 'MBI03_g39993_MAGBIO' => 'mbi', 'MBI05_g05627_MAGBIO' => 'mbi', 'MBI05_g05629_MAGBIO' => 'mbi', 'MBI05_g24485_MAGBIO' => 'mbi', 'MBI08_g40331_MAGBIO' => 'mbi', 'MBI08_g42718_MAGBIO' => 'mbi', 'MBI09_g14588_MAGBIO' => 'mbi', 'MBI10_g22588_MAGBIO' => 'mbi', 'MBI12_g45469_MAGBIO' => 'mbi', 'MBI14_g29305_MAGBIO' => 'mbi', 'MBI14_g47062_MAGBIO' => 'mbi', 'MBI15_g44393_MAGBIO' => 'mbi', 'MBI16_g37640_MAGBIO' => 'mbi', 'MBI18_g09847_MAGBIO' => 'mbi', 'MBI19_g14784_MAGBIO' => 'mbi', 'MD03G1042900' => 'mdo', 'MD04G1008800' => 'mdo', 'MD08G1006400' => 'mdo', 'MD11G1045900' => 'mdo', 'MD13G1138800' => 'mdo', 'MD15G1005800' => 'mdo', 'Medtr1g116180' => 'mtr', 'Medtr3g009890' => 'mtr', 'Medtr3g114920' => 'mtr', 'Medtr7g005970' => 'mtr', 'MELO3C016999.2' => 'cme', 'MELO3C020449.2' => 'cme', 'MELO3C028458.2' => 'cme', 'Migut.C00909' => 'egut', 'Migut.G00695' => 'egut', 'Migut.H01714' => 'egut', 'MSTRG.13044' => 'ama', 'MSTRG.14524' => 'ama', 'Nitab4.5_0000498g0170' => 'nta', 'Nitab4.5_0000898g0060' => 'nta', 'Nitab4.5_0000898g0160' => 'nta', 'Nitab4.5_0002216g0010' => 'nta', 'Nitab4.5_0002353g0020' => 'nta', 'Nitab4.5_0003570g0010' => 'nta', 'Nitab4.5_0019106g0010' => 'nta', 'Nn1g07633' => 'nnu', 'Nn1g07879' => 'nnu', 'Nn3g17439' => 'nnu', 'Nn3g20036' => 'nnu', 'Nn5g30235' => 'nnu', 'Nn5g30869' => 'nnu', 'Nn6g31871' => 'nnu', 'Nn6g34418' => 'nnu', 'Oeu006262.2' => 'oeu', 'Oeu013804.1' => 'oeu', 'Oeu019804.1' => 'oeu', 'Oeu019807.1' => 'oeu', 'Oeu019814.1' => 'oeu', 'Oeu019815.1' => 'oeu', 'Oeu022371.1' => 'oeu', 'Oeu034575.1' => 'oeu', 'Oeu034576.1' => 'oeu', 'Oeu041363.1' => 'oeu', 'Oeu055360.1' => 'oeu', 'Oeu064068.1' => 'oeu', 'Os02g0469900' => 'osa', 'Peaxi162Scf00047g00519' => 'pax', 'Peaxi162Scf00064g00829' => 'pax', 'Peaxi162Scf15341g00003' => 'pax', 'PGR031G2500' => 'pgr', 'PGR083G2486' => 'pgr', 'PGR142G3678' => 'pgr', 'PGSC0003DMG400029327' => 'stu', 'PGSC0003DMG400031288' => 'stu', 'PGSC0003DMG401018896' => 'stu', 'PGSC0003DMG402018896' => 'stu', 'Phvul.005G004300' => 'pvu', 'Phvul.007G006000' => 'pvu', 'Phvul.007G006100' => 'pvu', 'Phvul.009G020700' => 'pvu', 'Potri.001G315200' => 'ptr', 'Potri.005G246700' => 'ptr', 'Potri.011G168800' => 'ptr', 'Potri.017G055200' => 'ptr', 'Pp3c1_33100' => 'ppa', 'Pp3c7_23660' => 'ppa', 'Prupe.1G008100' => 'ppe', 'Prupe.1G358300' => 'ppe', 'Prupe.6G035300' => 'ppe', 'Psat0s2083g0160' => 'psa', 'Psat0s2083g0240' => 'psa', 'Psat0s2228g0080' => 'psa', 'Psat3g107360' => 'psa', 'Psat5g011640' => 'psa', 'Psat5g231880' => 'psa', 'Psat6g240880' => 'psa', 'Psat6g240920' => 'psa', 'Psat7g039280' => 'psa', 'Psat7g043960' => 'psa', 'Psat7g192760' => 'psa', 'Psat7g192800' => 'psa', 'PSO017G7019' => 'pso', 'PSO063G2803' => 'pso', 'PSO063G5485' => 'pso', 'PSO170G1184' => 'pso', 'PSO210G5207' => 'pso', 'PSO782G5301' => 'pso', 'QL02p013344' => 'qlo', 'QL06p024828' => 'qlo', 'QL08p000529' => 'qlo', 'QL09p053965' => 'qlo', 'RcHm_v2.0_Chr4g0415261' => 'rch', 'RcHm_v2.0_Chr5g0074651' => 'rch', 'RcHm_v2.0_Chr6g0303791' => 'rch', 'Rhsim01G0255400' => 'rsi', 'Rhsim04G0007700' => 'rsi', 'Rhsim06G0010600' => 'rsi', 'Rhsim09G0056200' => 'rsi', 'Sabra05G0190700' => 'sbr', 'Sabra11G0137900' => 'sbr', 'Sabra16G0199400' => 'sbr', 'Sabra17G0046800' => 'sbr', 'Sabra17G0049000' => 'sbr', 'SalBow7G1352' => 'sbo', 'SalBow8G0560' => 'sbo', 'SalBow8G3132' => 'sbo', 'Sc03g0011770' => 'sci', 'Sc13g0000190' => 'sci', 'Sc26g0004500' => 'sci', 'Sed0002207' => 'sed', 'Sed0018827' => 'sed', 'Sed0026703' => 'sed', 'SEGI_03044' => 'sgi', 'SEGI_07905' => 'sgi', 'SEGI_08051' => 'sgi', 'SEGI_16568' => 'sgi', 'SEGI_20255' => 'sgi', 'SEGI_21670' => 'sgi', 'SEGI_22736' => 'sgi', 'SEGI_24820' => 'sgi', 'SEGI_28457' => 'sgi', 'SEGI_29019' => 'sgi', 'SEGI_34433' => 'sgi', 'SEGI_36133' => 'sgi', 'SEGI_37314' => 'sgi', 'SEGI_37984' => 'sgi', 'SEGI_38962' => 'sgi', 'SGA_v2.0_scaffold11G05960' => 'sas', 'SGA_v2.0_scaffold145G36109' => 'sas', 'SGA_v2.0_scaffold57G20102' => 'sas', 'SGA_v2.0_scaffold92G28174' => 'sas', 'SHI01078' => 'shi', 'SHI01084' => 'shi', 'SHI21549' => 'shi', 'SHI21553' => 'shi', 'SMO367G0512' => 'smo', 'SMO367G0741' => 'smo', 'Solyc01g011277.1' => 'sly', 'Solyc09g091960.3' => 'sly', 'Solyc12g016190.2' => 'sly', 'Solyc12g094440.2' => 'sly', 'Sopen09g034860' => 'spe', 'Sopen12g007980' => 'spe', 'Sopen12g031330' => 'spe', 'Sp1g03720' => 'spa', 'Sp1g41270' => 'spa', 'Sp3g11550' => 'spa', 'Sp4g15180' => 'spa', 'Sp5g31230' => 'spa', 'SpUn0748_0010' => 'spa', 'TAR362G1147' => 'tar', 'TAR362G1235' => 'tar', 'TAR365G1158' => 'tar', 'TAR627G0328' => 'tar', 'TAR628G0748' => 'tar', 'THA.LOC104801030' => 'tha', 'THA.LOC104810304' => 'tha', 'THA.LOC104811448' => 'tha', 'THA.LOC104822702' => 'tha', 'THA.LOC104827380' => 'tha', 'Thecc.04G201600' => 'tca', 'Thecc.04G201800' => 'tca', 'Thecc.04G203600' => 'tca', 'Thecc.07G001600' => 'tca', 'Thecc.08G053400' => 'tca', 'Thhalv10007631m.g' => 'esa', 'Thhalv10011675m.g' => 'esa', 'Thhalv10017702m.g' => 'esa', 'Thhalv10017860m.g' => 'esa', 'Thhalv10018826m.g' => 'esa', 'Thhalv10021143m.g' => 'esa', 'TPR.G10416' => 'tpr', 'TPR.G15603' => 'tpr', 'TPR.G16692' => 'tpr', 'TPR.G38136' => 'tpr', 'TWI09G0965' => 'twi', 'TWI09G1575' => 'twi', 'TWI38G2024' => 'twi', 'TWI39G1003' => 'twi', 'TWI56G0846' => 'twi', 'TWI73G1259' => 'twi', 'unitig_21.g20260' => 'ugi', 'unitig_46.g18041' => 'ugi', 'unitig_744.g24498' => 'ugi', 'unitig_747.g21678' => 'ugi', 'vmacro00473' => 'vma', 'vmacro09799' => 'vma', 'vmacro21843' => 'vma', 'VMungo0720G0565' => 'vmu', 'VMungo1080G0142' => 'vmu', 'VMungo1309G2014' => 'vmu', 'Zm00001eb203110' => 'zma', 'Zm00001eb240740' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001261', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001261' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '496', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001261' ) ), 'genes' => array( 'A04p08390' => 'bna', 'A05p17360' => 'bna', 'A05p36190' => 'bna', 'A05p36210' => 'bna', 'A05p36230' => 'bna', 'A05p36240' => 'bna', 'A05p36250' => 'bna', 'A05p36270' => 'bna', 'A06p00070' => 'bna', 'A07p41670' => 'bna', 'A08p36660' => 'bna', 'A09p67700' => 'bna', 'A10p03310' => 'bna', 'Aa31LG10G570' => 'aar', 'Aa31LG1G19880' => 'aar', 'Aa31LG4G6230' => 'aar', 'Aa31LG8G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3465' => 'aag', 'Actinidia03674' => 'ach', 'Actinidia15468' => 'ach', 'Actinidia17023' => 'ach', 'Actinidia33185' => 'ach', 'Actinidia33186' => 'ach', 'Actinidia35864' => 'ach', 'Ah.13g073330' => 'amhyb', 'Ah.13g078140' => 'amhyb', 'AL1G14600' => 'aly', 'AL2G36150' => 'aly', 'AL3G25180' => 'aly', 'AL3G25200' => 'aly', 'Aqoxy1G04297' => 'aox', 'Aqoxy2G02705' => 'aox', 'Aqoxy2G03859' => 'aox', 'Aqoxy5G01079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03HAKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5WUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P4JNJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9QP8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5DIHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFLF6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8R3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM4VCW' => 'arhy', 'AT1G04880' => 'ath', 'AT1G55650' => 'ath', 'AT1G76110' => 'ath', 'AT3G13350' => 'ath', 'ATR0661G320' => 'atr', 'ATR0693G224' => 'atr', 'ATR0751G203' => 'atr', 'ATR1145G108' => 'atr', 'Atru.chr13.200' => 'acertr', 'Atru.chr2.3895' => 'acertr', 'Atru.chr4.1702' => 'acertr', 'AUR62002429' => 'cqu', 'AUR62013853' => 'cqu', 'AUR62018594' => 'cqu', 'AUR62020824' => 'cqu', 'AUR62023759' => 'cqu', 'AUR62036747' => 'cqu', 'AUR62036749' => 'cqu', 'BcaB02g06895' => 'bca', 'BcaB02g10808' => 'bca', 'BcaB03g13467' => 'bca', 'BcaB06g25460' => 'bca', 'BcaB06g25461' => 'bca', 'BcaB06g25462' => 'bca', 'BcaB06g25463' => 'bca', 'BcaB06g25464' => 'bca', 'BcaB06g25465' => 'bca', 'BcaB06g25466' => 'bca', 'BcaB06g25467' => 'bca', 'BcaB06g25468' => 'bca', 'BcaB06g25469' => 'bca', 'BcaB07g33194' => 'bca', 'BcaB08g35798' => 'bca', 'BcaC02g09388' => 'bca', 'BcaC05g24433' => 'bca', 'BcaC05g29186' => 'bca', 'BcaC05g29187' => 'bca', 'BcaC07g36873' => 'bca', 'BcaC07g42156' => 'bca', 'BcaC08g43643' => 'bca', 'BcaC08g44208' => 'bca', 'BcaC08g47104' => 'bca', 'BcaC08g47291' => 'bca', 'BcaNung05157' => 'bca', 'BcaNung05159' => 'bca', 'BcaNung05160' => 'bca', 'BcaNung05161' => 'bca', 'BolC4t25792H' => 'bol', 'BolC5t29085H' => 'bol', 'BolC5t34121H' => 'bol', 'BolC5t34123H' => 'bol', 'BolC6t36142H' => 'bol', 'BolC6t36814H' => 'bol', 'BolC6t40044H' => 'bol', 'BolC8t46960H' => 'bol', 'BolC8t52735H' => 'bol', 'BraA04t16526Z' => 'bra', 'BraA05t20632Z' => 'bra', 'BraA05t22423Z' => 'bra', 'BraA05t22425Z' => 'bra', 'BraA05t22428Z' => 'bra', 'BraA06t23222Z' => 'bra', 'BraA07t31696Z' => 'bra', 'BraA08t35569Z' => 'bra', 'BraA09t42100Z' => 'bra', 'BraA10t42607Z' => 'bra', 'C04p42090' => 'bna', 'C05p03030' => 'bna', 'C05p54550' => 'bna', 'C05p54570' => 'bna', 'C06p10620' => 'bna', 'C06p16170' => 'bna', 'C06p50050' => 'bna', 'C08p01550' => 'bna', 'C08p52030' => 'bna', 'CAN.G1635.7' => 'can', 'CAN.G268.3' => 'can', 'CAN.G401.12' => 'can', 'CAN.G401.4' => 'can', 'CAN.G401.6' => 'can', 'CAN.G8.47' => 'can', 'CANSAT11G1516' => 'cansat', 'CANSAT25G2358' => 'cansat', 'CANSAT78G1324' => 'cansat', 'CARHR004270' => 'chi', 'CARHR069650' => 'chi', 'CARHR087960' => 'chi', 'Carub.0001s0412' => 'cru', 'Carub.0001s3629' => 'cru', 'Carub.0001s4417' => 'cru', 'Carub.0002s0846' => 'cru', 'Carub.0002s0851' => 'cru', 'Carub.0002s0854' => 'cru', 'Carub.0002s2299' => 'cru', 'Carub.0003s1273' => 'cru', 'Carub.0004s1422' => 'cru', 'Carub.0007s3214' => 'cru', 'Ca_11377_v3' => 'car', 'Ca_14139_v3' => 'car', 'Ca_15451_v3' => 'car', 'CBR_g48690' => 'cbr', 'Cc03_g07860' => 'ccan', 'Cc05_g15700' => 'ccan', 'Cc10_g01010' => 'ccan', 'CDE02G0773' => 'cde', 'CDE02G4389' => 'cde', 'CDE03G0487' => 'cde', 'CDE04G1419' => 'cde', 'CDE06G2760' => 'cde', 'CDE06G2769' => 'cde', 'Cfa014019' => 'cfa', 'Cfa014913' => 'cfa', 'Cfa016960' => 'cfa', 'Ciclev10001816m.g' => 'ccl', 'Ciclev10005091m.g' => 'ccl', 'Ciclev10008919m.g' => 'ccl', 'CiPaw.01G121000' => 'cil', 'CiPaw.02G066300' => 'cil', 'CiPaw.07G142500' => 'cil', 'CiPaw.09G129700' => 'cil', 'CiPaw.11G210600' => 'cil', 'CiPaw.12G142500' => 'cil', 'ClCG05G015360' => 'cla', 'ClCG06G007770' => 'cla', 'COL.COLO4_07788' => 'col', 'COL.COLO4_09888' => 'col', 'COL.COLO4_26067' => 'col', 'Cpa.g.sc1068.1' => 'cpa', 'Cpa.g.sc12.68' => 'cpa', 'Cpa.g.sc26.248' => 'cpa', 'Cre13.g571050' => 'cre', 'CsaV3_2G011520' => 'csa', 'CsaV3_4G037000' => 'csa', 'CSS0037068' => 'camsi', 'CSS0039401' => 'camsi', 'CSS0043696' => 'camsi', 'CSS0046638' => 'camsi', 'CSS0047336' => 'camsi', 'CSS0050103' => 'camsi', 'DCAR_013758' => 'dca', 'DCAR_017610' => 'dca', 'DCAR_024473' => 'dca', 'DCAR_026613' => 'dca', 'Dinv03680' => 'din', 'Dinv12686' => 'din', 'Dinv19195' => 'din', 'Dinv19644' => 'din', 'Dinv27237' => 'din', 'Dinv31906' => 'din', 'Dinv38233' => 'din', 'Dinv39562' => 'din', 'Dinv40915' => 'din', 'Duzib041G0438' => 'dzi', 'Duzib093G0420' => 'dzi', 'Duzib116G0121' => 'dzi', 'Duzib212G0740' => 'dzi', 'Duzib213G0274' => 'dzi', 'Duzib268G0395' => 'dzi', 'Duzib268G0907' => 'dzi', 'ECA232G0527' => 'eca', 'ECA238G1605' => 'eca', 'ECA240G2895' => 'eca', 'ECA248G3338' => 'eca', 'EL10Ac1g02053' => 'bvu', 'EL10Ac3g06122' => 'bvu', 'EL10Ac3g07478' => 'bvu', 'Eucgr.F01991' => 'egr', 'Eucgr.F03526' => 'egr', 'Eucgr.H00052' => 'egr', 'FAN07G2115' => 'fan', 'FAN11G1862' => 'fan', 'FAN12G3417' => 'fan', 'FAN15G0503' => 'fan', 'FAN16G2494' => 'fan', 'FAN17G1455' => 'fan', 'FAN20G1477' => 'fan', 'FAN21G2040' => 'fan', 'FAN22G0086' => 'fan', 'FAN25G3495' => 'fan', 'FAN27G0685' => 'fan', 'FvH4_3g41610' => 'fve', 'FvH4_4g16370' => 'fve', 'Glyma.04G020000' => 'gma', 'Glyma.04G113000' => 'gma', 'Glyma.06G321700' => 'gma', 'Glyma.10G294000' => 'gma', 'Glyma.10G294100' => 'gma', 'Glyma.20G243900' => 'gma', 'Gohir.A03G094500' => 'ghi', 'Gohir.A05G182100' => 'ghi', 'Gohir.A10G124901' => 'ghi', 'Gohir.A13G128500' => 'ghi', 'Gohir.D02G123900' => 'ghi', 'Gohir.D05G185100' => 'ghi', 'Gohir.D10G141600' => 'ghi', 'Gohir.D13G131900' => 'ghi', 'Gorai.002G194700' => 'gra', 'Gorai.005G130200' => 'gra', 'Gorai.009G190400' => 'gra', 'Gorai.011G157600' => 'gra', 'Gorai.013G147900' => 'gra', 'GSVIVG01008723001' => 'vvi', 'GSVIVG01014843001' => 'vvi', 'GSVIVG01021061001' => 'vvi', 'HanXRQChr03g0077881' => 'han', 'HanXRQChr04g0114861' => 'han', 'HanXRQChr14g0435981' => 'han', 'Haze_09915' => 'cav', 'Haze_11610' => 'cav', 'Haze_22726' => 'cav', 'Hma1.2p1_0383F.1_g140250' => 'hma', 'Hma1.2p1_0383F.1_g140260' => 'hma', 'Hma1.2p1_1407F.1_g281450' => 'hma', 'HPP92_003491' => 'vpl', 'HPP92_008114' => 'vpl', 'HPP92_009907' => 'vpl', 'HPP92_020464' => 'vpl', 'HPP92_026168' => 'vpl', 'HPP92_026889' => 'vpl', 'Hund05144' => 'sun', 'Hund22972' => 'sun', 'Lalb_Chr02g0144151' => 'lal', 'Lalb_Chr08g0246331' => 'lal', 'Lalb_Chr11g0061761' => 'lal', 'Lalb_Chr11g0061771' => 'lal', 'Lalb_Chr11g0072731' => 'lal', 'Lalb_Chr18g0048641' => 'lal', 'Lalb_Chr21g0307471' => 'lal', 'Lj1g0016144' => 'lja', 'Lj1g0016814' => 'lja', 'Lj1g0017531' => 'lja', 'Lj3g0005977' => 'lja', 'Lj4A16T126' => 'lonja', 'Lj5g0016874' => 'lja', 'Lj6A553G29' => 'lonja', 'Lj8A183T36' => 'lonja', 'Lsat_1_v5_gn_1_71820' => 'lsa', 'Lsat_1_v5_gn_2_44980' => 'lsa', 'Lsat_1_v5_gn_9_46720' => 'lsa', 'Lsat_1_v5_gn_9_88540' => 'lsa', 'Manes.03G147600' => 'mes', 'Manes.05G204800' => 'mes', 'Manes.15G053800' => 'mes', 'Manes.18G008500' => 'mes', 'Mapoly0043s0128' => 'mpo', 'MBI01_g25650_MAGBIO' => 'mbi', 'MBI03_g39993_MAGBIO' => 'mbi', 'MBI05_g05627_MAGBIO' => 'mbi', 'MBI05_g05629_MAGBIO' => 'mbi', 'MBI05_g24485_MAGBIO' => 'mbi', 'MBI08_g40331_MAGBIO' => 'mbi', 'MBI08_g42718_MAGBIO' => 'mbi', 'MBI09_g14588_MAGBIO' => 'mbi', 'MBI10_g22588_MAGBIO' => 'mbi', 'MBI12_g45469_MAGBIO' => 'mbi', 'MBI14_g29305_MAGBIO' => 'mbi', 'MBI14_g47062_MAGBIO' => 'mbi', 'MBI15_g44393_MAGBIO' => 'mbi', 'MBI16_g37640_MAGBIO' => 'mbi', 'MBI18_g09847_MAGBIO' => 'mbi', 'MBI19_g14784_MAGBIO' => 'mbi', 'MD03G1042900' => 'mdo', 'MD04G1008800' => 'mdo', 'MD08G1006400' => 'mdo', 'MD11G1045900' => 'mdo', 'MD13G1138800' => 'mdo', 'MD15G1005800' => 'mdo', 'Medtr1g116180' => 'mtr', 'Medtr3g009890' => 'mtr', 'Medtr3g114920' => 'mtr', 'Medtr7g005970' => 'mtr', 'MELO3C016999.2' => 'cme', 'MELO3C020449.2' => 'cme', 'MELO3C028458.2' => 'cme', 'Migut.C00909' => 'egut', 'Migut.G00695' => 'egut', 'Migut.H01714' => 'egut', 'MSTRG.13044' => 'ama', 'MSTRG.14524' => 'ama', 'Nitab4.5_0000498g0170' => 'nta', 'Nitab4.5_0000898g0060' => 'nta', 'Nitab4.5_0000898g0160' => 'nta', 'Nitab4.5_0002216g0010' => 'nta', 'Nitab4.5_0002353g0020' => 'nta', 'Nitab4.5_0003570g0010' => 'nta', 'Nitab4.5_0019106g0010' => 'nta', 'Nn1g07633' => 'nnu', 'Nn1g07879' => 'nnu', 'Nn3g17439' => 'nnu', 'Nn3g20036' => 'nnu', 'Nn5g30235' => 'nnu', 'Nn5g30869' => 'nnu', 'Nn6g31871' => 'nnu', 'Nn6g34418' => 'nnu', 'Oeu006262.2' => 'oeu', 'Oeu013804.1' => 'oeu', 'Oeu019804.1' => 'oeu', 'Oeu019807.1' => 'oeu', 'Oeu019814.1' => 'oeu', 'Oeu019815.1' => 'oeu', 'Oeu022371.1' => 'oeu', 'Oeu034575.1' => 'oeu', 'Oeu034576.1' => 'oeu', 'Oeu041363.1' => 'oeu', 'Oeu055360.1' => 'oeu', 'Oeu064068.1' => 'oeu', 'Os02g0469900' => 'osa', 'Peaxi162Scf00047g00519' => 'pax', 'Peaxi162Scf00064g00829' => 'pax', 'Peaxi162Scf15341g00003' => 'pax', 'PGR031G2500' => 'pgr', 'PGR083G2486' => 'pgr', 'PGR142G3678' => 'pgr', 'PGSC0003DMG400029327' => 'stu', 'PGSC0003DMG400031288' => 'stu', 'PGSC0003DMG401018896' => 'stu', 'PGSC0003DMG402018896' => 'stu', 'Phvul.005G004300' => 'pvu', 'Phvul.007G006000' => 'pvu', 'Phvul.007G006100' => 'pvu', 'Phvul.009G020700' => 'pvu', 'Potri.001G315200' => 'ptr', 'Potri.005G246700' => 'ptr', 'Potri.011G168800' => 'ptr', 'Potri.017G055200' => 'ptr', 'Pp3c1_33100' => 'ppa', 'Pp3c7_23660' => 'ppa', 'Prupe.1G008100' => 'ppe', 'Prupe.1G358300' => 'ppe', 'Prupe.6G035300' => 'ppe', 'Psat0s2083g0160' => 'psa', 'Psat0s2083g0240' => 'psa', 'Psat0s2228g0080' => 'psa', 'Psat3g107360' => 'psa', 'Psat5g011640' => 'psa', 'Psat5g231880' => 'psa', 'Psat6g240880' => 'psa', 'Psat6g240920' => 'psa', 'Psat7g039280' => 'psa', 'Psat7g043960' => 'psa', 'Psat7g192760' => 'psa', 'Psat7g192800' => 'psa', 'PSO017G7019' => 'pso', 'PSO063G2803' => 'pso', 'PSO063G5485' => 'pso', 'PSO170G1184' => 'pso', 'PSO210G5207' => 'pso', 'PSO782G5301' => 'pso', 'QL02p013344' => 'qlo', 'QL06p024828' => 'qlo', 'QL08p000529' => 'qlo', 'QL09p053965' => 'qlo', 'RcHm_v2.0_Chr4g0415261' => 'rch', 'RcHm_v2.0_Chr5g0074651' => 'rch', 'RcHm_v2.0_Chr6g0303791' => 'rch', 'Rhsim01G0255400' => 'rsi', 'Rhsim04G0007700' => 'rsi', 'Rhsim06G0010600' => 'rsi', 'Rhsim09G0056200' => 'rsi', 'Sabra05G0190700' => 'sbr', 'Sabra11G0137900' => 'sbr', 'Sabra16G0199400' => 'sbr', 'Sabra17G0046800' => 'sbr', 'Sabra17G0049000' => 'sbr', 'SalBow7G1352' => 'sbo', 'SalBow8G0560' => 'sbo', 'SalBow8G3132' => 'sbo', 'Sc03g0011770' => 'sci', 'Sc13g0000190' => 'sci', 'Sc26g0004500' => 'sci', 'Sed0002207' => 'sed', 'Sed0018827' => 'sed', 'Sed0026703' => 'sed', 'SEGI_03044' => 'sgi', 'SEGI_07905' => 'sgi', 'SEGI_08051' => 'sgi', 'SEGI_16568' => 'sgi', 'SEGI_20255' => 'sgi', 'SEGI_21670' => 'sgi', 'SEGI_22736' => 'sgi', 'SEGI_24820' => 'sgi', 'SEGI_28457' => 'sgi', 'SEGI_29019' => 'sgi', 'SEGI_34433' => 'sgi', 'SEGI_36133' => 'sgi', 'SEGI_37314' => 'sgi', 'SEGI_37984' => 'sgi', 'SEGI_38962' => 'sgi', 'SGA_v2.0_scaffold11G05960' => 'sas', 'SGA_v2.0_scaffold145G36109' => 'sas', 'SGA_v2.0_scaffold57G20102' => 'sas', 'SGA_v2.0_scaffold92G28174' => 'sas', 'SHI01078' => 'shi', 'SHI01084' => 'shi', 'SHI21549' => 'shi', 'SHI21553' => 'shi', 'SMO367G0512' => 'smo', 'SMO367G0741' => 'smo', 'Solyc01g011277.1' => 'sly', 'Solyc09g091960.3' => 'sly', 'Solyc12g016190.2' => 'sly', 'Solyc12g094440.2' => 'sly', 'Sopen09g034860' => 'spe', 'Sopen12g007980' => 'spe', 'Sopen12g031330' => 'spe', 'Sp1g03720' => 'spa', 'Sp1g41270' => 'spa', 'Sp3g11550' => 'spa', 'Sp4g15180' => 'spa', 'Sp5g31230' => 'spa', 'SpUn0748_0010' => 'spa', 'TAR362G1147' => 'tar', 'TAR362G1235' => 'tar', 'TAR365G1158' => 'tar', 'TAR627G0328' => 'tar', 'TAR628G0748' => 'tar', 'THA.LOC104801030' => 'tha', 'THA.LOC104810304' => 'tha', 'THA.LOC104811448' => 'tha', 'THA.LOC104822702' => 'tha', 'THA.LOC104827380' => 'tha', 'Thecc.04G201600' => 'tca', 'Thecc.04G201800' => 'tca', 'Thecc.04G203600' => 'tca', 'Thecc.07G001600' => 'tca', 'Thecc.08G053400' => 'tca', 'Thhalv10007631m.g' => 'esa', 'Thhalv10011675m.g' => 'esa', 'Thhalv10017702m.g' => 'esa', 'Thhalv10017860m.g' => 'esa', 'Thhalv10018826m.g' => 'esa', 'Thhalv10021143m.g' => 'esa', 'TPR.G10416' => 'tpr', 'TPR.G15603' => 'tpr', 'TPR.G16692' => 'tpr', 'TPR.G38136' => 'tpr', 'TWI09G0965' => 'twi', 'TWI09G1575' => 'twi', 'TWI38G2024' => 'twi', 'TWI39G1003' => 'twi', 'TWI56G0846' => 'twi', 'TWI73G1259' => 'twi', 'unitig_21.g20260' => 'ugi', 'unitig_46.g18041' => 'ugi', 'unitig_744.g24498' => 'ugi', 'unitig_747.g21678' => 'ugi', 'vmacro00473' => 'vma', 'vmacro09799' => 'vma', 'vmacro21843' => 'vma', 'VMungo0720G0565' => 'vmu', 'VMungo1080G0142' => 'vmu', 'VMungo1309G2014' => 'vmu', 'Zm00001eb203110' => 'zma', 'Zm00001eb240740' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001261' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001261' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001261' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001261' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '496', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p08390' => 'bna', 'A05p17360' => 'bna', 'A05p36190' => 'bna', 'A05p36210' => 'bna', 'A05p36230' => 'bna', 'A05p36240' => 'bna', 'A05p36250' => 'bna', 'A05p36270' => 'bna', 'A06p00070' => 'bna', 'A07p41670' => 'bna', 'A08p36660' => 'bna', 'A09p67700' => 'bna', 'A10p03310' => 'bna', 'Aa31LG10G570' => 'aar', 'Aa31LG1G19880' => 'aar', 'Aa31LG4G6230' => 'aar', 'Aa31LG8G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3465' => 'aag', 'Actinidia03674' => 'ach', 'Actinidia15468' => 'ach', 'Actinidia17023' => 'ach', 'Actinidia33185' => 'ach', 'Actinidia33186' => 'ach', 'Actinidia35864' => 'ach', 'Ah.13g073330' => 'amhyb', 'Ah.13g078140' => 'amhyb', 'AL1G14600' => 'aly', 'AL2G36150' => 'aly', 'AL3G25180' => 'aly', 'AL3G25200' => 'aly', 'Aqoxy1G04297' => 'aox', 'Aqoxy2G02705' => 'aox', 'Aqoxy2G03859' => 'aox', 'Aqoxy5G01079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03HAKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5WUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P4JNJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9QP8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5DIHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFLF6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8R3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM4VCW' => 'arhy', 'AT1G04880' => 'ath', 'AT1G55650' => 'ath', 'AT1G76110' => 'ath', 'AT3G13350' => 'ath', 'ATR0661G320' => 'atr', 'ATR0693G224' => 'atr', 'ATR0751G203' => 'atr', 'ATR1145G108' => 'atr', 'Atru.chr13.200' => 'acertr', 'Atru.chr2.3895' => 'acertr', 'Atru.chr4.1702' => 'acertr', 'AUR62002429' => 'cqu', 'AUR62013853' => 'cqu', 'AUR62018594' => 'cqu', 'AUR62020824' => 'cqu', 'AUR62023759' => 'cqu', 'AUR62036747' => 'cqu', 'AUR62036749' => 'cqu', 'BcaB02g06895' => 'bca', 'BcaB02g10808' => 'bca', 'BcaB03g13467' => 'bca', 'BcaB06g25460' => 'bca', 'BcaB06g25461' => 'bca', 'BcaB06g25462' => 'bca', 'BcaB06g25463' => 'bca', 'BcaB06g25464' => 'bca', 'BcaB06g25465' => 'bca', 'BcaB06g25466' => 'bca', 'BcaB06g25467' => 'bca', 'BcaB06g25468' => 'bca', 'BcaB06g25469' => 'bca', 'BcaB07g33194' => 'bca', 'BcaB08g35798' => 'bca', 'BcaC02g09388' => 'bca', 'BcaC05g24433' => 'bca', 'BcaC05g29186' => 'bca', 'BcaC05g29187' => 'bca', 'BcaC07g36873' => 'bca', 'BcaC07g42156' => 'bca', 'BcaC08g43643' => 'bca', 'BcaC08g44208' => 'bca', 'BcaC08g47104' => 'bca', 'BcaC08g47291' => 'bca', 'BcaNung05157' => 'bca', 'BcaNung05159' => 'bca', 'BcaNung05160' => 'bca', 'BcaNung05161' => 'bca', 'BolC4t25792H' => 'bol', 'BolC5t29085H' => 'bol', 'BolC5t34121H' => 'bol', 'BolC5t34123H' => 'bol', 'BolC6t36142H' => 'bol', 'BolC6t36814H' => 'bol', 'BolC6t40044H' => 'bol', 'BolC8t46960H' => 'bol', 'BolC8t52735H' => 'bol', 'BraA04t16526Z' => 'bra', 'BraA05t20632Z' => 'bra', 'BraA05t22423Z' => 'bra', 'BraA05t22425Z' => 'bra', 'BraA05t22428Z' => 'bra', 'BraA06t23222Z' => 'bra', 'BraA07t31696Z' => 'bra', 'BraA08t35569Z' => 'bra', 'BraA09t42100Z' => 'bra', 'BraA10t42607Z' => 'bra', 'C04p42090' => 'bna', 'C05p03030' => 'bna', 'C05p54550' => 'bna', 'C05p54570' => 'bna', 'C06p10620' => 'bna', 'C06p16170' => 'bna', 'C06p50050' => 'bna', 'C08p01550' => 'bna', 'C08p52030' => 'bna', 'CAN.G1635.7' => 'can', 'CAN.G268.3' => 'can', 'CAN.G401.12' => 'can', 'CAN.G401.4' => 'can', 'CAN.G401.6' => 'can', 'CAN.G8.47' => 'can', 'CANSAT11G1516' => 'cansat', 'CANSAT25G2358' => 'cansat', 'CANSAT78G1324' => 'cansat', 'CARHR004270' => 'chi', 'CARHR069650' => 'chi', 'CARHR087960' => 'chi', 'Carub.0001s0412' => 'cru', 'Carub.0001s3629' => 'cru', 'Carub.0001s4417' => 'cru', 'Carub.0002s0846' => 'cru', 'Carub.0002s0851' => 'cru', 'Carub.0002s0854' => 'cru', 'Carub.0002s2299' => 'cru', 'Carub.0003s1273' => 'cru', 'Carub.0004s1422' => 'cru', 'Carub.0007s3214' => 'cru', 'Ca_11377_v3' => 'car', 'Ca_14139_v3' => 'car', 'Ca_15451_v3' => 'car', 'CBR_g48690' => 'cbr', 'Cc03_g07860' => 'ccan', 'Cc05_g15700' => 'ccan', 'Cc10_g01010' => 'ccan', 'CDE02G0773' => 'cde', 'CDE02G4389' => 'cde', 'CDE03G0487' => 'cde', 'CDE04G1419' => 'cde', 'CDE06G2760' => 'cde', 'CDE06G2769' => 'cde', 'Cfa014019' => 'cfa', 'Cfa014913' => 'cfa', 'Cfa016960' => 'cfa', 'Ciclev10001816m.g' => 'ccl', 'Ciclev10005091m.g' => 'ccl', 'Ciclev10008919m.g' => 'ccl', 'CiPaw.01G121000' => 'cil', 'CiPaw.02G066300' => 'cil', 'CiPaw.07G142500' => 'cil', 'CiPaw.09G129700' => 'cil', 'CiPaw.11G210600' => 'cil', 'CiPaw.12G142500' => 'cil', 'ClCG05G015360' => 'cla', 'ClCG06G007770' => 'cla', 'COL.COLO4_07788' => 'col', 'COL.COLO4_09888' => 'col', 'COL.COLO4_26067' => 'col', 'Cpa.g.sc1068.1' => 'cpa', 'Cpa.g.sc12.68' => 'cpa', 'Cpa.g.sc26.248' => 'cpa', 'Cre13.g571050' => 'cre', 'CsaV3_2G011520' => 'csa', 'CsaV3_4G037000' => 'csa', 'CSS0037068' => 'camsi', 'CSS0039401' => 'camsi', 'CSS0043696' => 'camsi', 'CSS0046638' => 'camsi', 'CSS0047336' => 'camsi', 'CSS0050103' => 'camsi', 'DCAR_013758' => 'dca', 'DCAR_017610' => 'dca', 'DCAR_024473' => 'dca', 'DCAR_026613' => 'dca', 'Dinv03680' => 'din', 'Dinv12686' => 'din', 'Dinv19195' => 'din', 'Dinv19644' => 'din', 'Dinv27237' => 'din', 'Dinv31906' => 'din', 'Dinv38233' => 'din', 'Dinv39562' => 'din', 'Dinv40915' => 'din', 'Duzib041G0438' => 'dzi', 'Duzib093G0420' => 'dzi', 'Duzib116G0121' => 'dzi', 'Duzib212G0740' => 'dzi', 'Duzib213G0274' => 'dzi', 'Duzib268G0395' => 'dzi', 'Duzib268G0907' => 'dzi', 'ECA232G0527' => 'eca', 'ECA238G1605' => 'eca', 'ECA240G2895' => 'eca', 'ECA248G3338' => 'eca', 'EL10Ac1g02053' => 'bvu', 'EL10Ac3g06122' => 'bvu', 'EL10Ac3g07478' => 'bvu', 'Eucgr.F01991' => 'egr', 'Eucgr.F03526' => 'egr', 'Eucgr.H00052' => 'egr', 'FAN07G2115' => 'fan', 'FAN11G1862' => 'fan', 'FAN12G3417' => 'fan', 'FAN15G0503' => 'fan', 'FAN16G2494' => 'fan', 'FAN17G1455' => 'fan', 'FAN20G1477' => 'fan', 'FAN21G2040' => 'fan', 'FAN22G0086' => 'fan', 'FAN25G3495' => 'fan', 'FAN27G0685' => 'fan', 'FvH4_3g41610' => 'fve', 'FvH4_4g16370' => 'fve', 'Glyma.04G020000' => 'gma', 'Glyma.04G113000' => 'gma', 'Glyma.06G321700' => 'gma', 'Glyma.10G294000' => 'gma', 'Glyma.10G294100' => 'gma', 'Glyma.20G243900' => 'gma', 'Gohir.A03G094500' => 'ghi', 'Gohir.A05G182100' => 'ghi', 'Gohir.A10G124901' => 'ghi', 'Gohir.A13G128500' => 'ghi', 'Gohir.D02G123900' => 'ghi', 'Gohir.D05G185100' => 'ghi', 'Gohir.D10G141600' => 'ghi', 'Gohir.D13G131900' => 'ghi', 'Gorai.002G194700' => 'gra', 'Gorai.005G130200' => 'gra', 'Gorai.009G190400' => 'gra', 'Gorai.011G157600' => 'gra', 'Gorai.013G147900' => 'gra', 'GSVIVG01008723001' => 'vvi', 'GSVIVG01014843001' => 'vvi', 'GSVIVG01021061001' => 'vvi', 'HanXRQChr03g0077881' => 'han', 'HanXRQChr04g0114861' => 'han', 'HanXRQChr14g0435981' => 'han', 'Haze_09915' => 'cav', 'Haze_11610' => 'cav', 'Haze_22726' => 'cav', 'Hma1.2p1_0383F.1_g140250' => 'hma', 'Hma1.2p1_0383F.1_g140260' => 'hma', 'Hma1.2p1_1407F.1_g281450' => 'hma', 'HPP92_003491' => 'vpl', 'HPP92_008114' => 'vpl', 'HPP92_009907' => 'vpl', 'HPP92_020464' => 'vpl', 'HPP92_026168' => 'vpl', 'HPP92_026889' => 'vpl', 'Hund05144' => 'sun', 'Hund22972' => 'sun', 'Lalb_Chr02g0144151' => 'lal', 'Lalb_Chr08g0246331' => 'lal', 'Lalb_Chr11g0061761' => 'lal', 'Lalb_Chr11g0061771' => 'lal', 'Lalb_Chr11g0072731' => 'lal', 'Lalb_Chr18g0048641' => 'lal', 'Lalb_Chr21g0307471' => 'lal', 'Lj1g0016144' => 'lja', 'Lj1g0016814' => 'lja', 'Lj1g0017531' => 'lja', 'Lj3g0005977' => 'lja', 'Lj4A16T126' => 'lonja', 'Lj5g0016874' => 'lja', 'Lj6A553G29' => 'lonja', 'Lj8A183T36' => 'lonja', 'Lsat_1_v5_gn_1_71820' => 'lsa', 'Lsat_1_v5_gn_2_44980' => 'lsa', 'Lsat_1_v5_gn_9_46720' => 'lsa', 'Lsat_1_v5_gn_9_88540' => 'lsa', 'Manes.03G147600' => 'mes', 'Manes.05G204800' => 'mes', 'Manes.15G053800' => 'mes', 'Manes.18G008500' => 'mes', 'Mapoly0043s0128' => 'mpo', 'MBI01_g25650_MAGBIO' => 'mbi', 'MBI03_g39993_MAGBIO' => 'mbi', 'MBI05_g05627_MAGBIO' => 'mbi', 'MBI05_g05629_MAGBIO' => 'mbi', 'MBI05_g24485_MAGBIO' => 'mbi', 'MBI08_g40331_MAGBIO' => 'mbi', 'MBI08_g42718_MAGBIO' => 'mbi', 'MBI09_g14588_MAGBIO' => 'mbi', 'MBI10_g22588_MAGBIO' => 'mbi', 'MBI12_g45469_MAGBIO' => 'mbi', 'MBI14_g29305_MAGBIO' => 'mbi', 'MBI14_g47062_MAGBIO' => 'mbi', 'MBI15_g44393_MAGBIO' => 'mbi', 'MBI16_g37640_MAGBIO' => 'mbi', 'MBI18_g09847_MAGBIO' => 'mbi', 'MBI19_g14784_MAGBIO' => 'mbi', 'MD03G1042900' => 'mdo', 'MD04G1008800' => 'mdo', 'MD08G1006400' => 'mdo', 'MD11G1045900' => 'mdo', 'MD13G1138800' => 'mdo', 'MD15G1005800' => 'mdo', 'Medtr1g116180' => 'mtr', 'Medtr3g009890' => 'mtr', 'Medtr3g114920' => 'mtr', 'Medtr7g005970' => 'mtr', 'MELO3C016999.2' => 'cme', 'MELO3C020449.2' => 'cme', 'MELO3C028458.2' => 'cme', 'Migut.C00909' => 'egut', 'Migut.G00695' => 'egut', 'Migut.H01714' => 'egut', 'MSTRG.13044' => 'ama', 'MSTRG.14524' => 'ama', 'Nitab4.5_0000498g0170' => 'nta', 'Nitab4.5_0000898g0060' => 'nta', 'Nitab4.5_0000898g0160' => 'nta', 'Nitab4.5_0002216g0010' => 'nta', 'Nitab4.5_0002353g0020' => 'nta', 'Nitab4.5_0003570g0010' => 'nta', 'Nitab4.5_0019106g0010' => 'nta', 'Nn1g07633' => 'nnu', 'Nn1g07879' => 'nnu', 'Nn3g17439' => 'nnu', 'Nn3g20036' => 'nnu', 'Nn5g30235' => 'nnu', 'Nn5g30869' => 'nnu', 'Nn6g31871' => 'nnu', 'Nn6g34418' => 'nnu', 'Oeu006262.2' => 'oeu', 'Oeu013804.1' => 'oeu', 'Oeu019804.1' => 'oeu', 'Oeu019807.1' => 'oeu', 'Oeu019814.1' => 'oeu', 'Oeu019815.1' => 'oeu', 'Oeu022371.1' => 'oeu', 'Oeu034575.1' => 'oeu', 'Oeu034576.1' => 'oeu', 'Oeu041363.1' => 'oeu', 'Oeu055360.1' => 'oeu', 'Oeu064068.1' => 'oeu', 'Os02g0469900' => 'osa', 'Peaxi162Scf00047g00519' => 'pax', 'Peaxi162Scf00064g00829' => 'pax', 'Peaxi162Scf15341g00003' => 'pax', 'PGR031G2500' => 'pgr', 'PGR083G2486' => 'pgr', 'PGR142G3678' => 'pgr', 'PGSC0003DMG400029327' => 'stu', 'PGSC0003DMG400031288' => 'stu', 'PGSC0003DMG401018896' => 'stu', 'PGSC0003DMG402018896' => 'stu', 'Phvul.005G004300' => 'pvu', 'Phvul.007G006000' => 'pvu', 'Phvul.007G006100' => 'pvu', 'Phvul.009G020700' => 'pvu', 'Potri.001G315200' => 'ptr', 'Potri.005G246700' => 'ptr', 'Potri.011G168800' => 'ptr', 'Potri.017G055200' => 'ptr', 'Pp3c1_33100' => 'ppa', 'Pp3c7_23660' => 'ppa', 'Prupe.1G008100' => 'ppe', 'Prupe.1G358300' => 'ppe', 'Prupe.6G035300' => 'ppe', 'Psat0s2083g0160' => 'psa', 'Psat0s2083g0240' => 'psa', 'Psat0s2228g0080' => 'psa', 'Psat3g107360' => 'psa', 'Psat5g011640' => 'psa', 'Psat5g231880' => 'psa', 'Psat6g240880' => 'psa', 'Psat6g240920' => 'psa', 'Psat7g039280' => 'psa', 'Psat7g043960' => 'psa', 'Psat7g192760' => 'psa', 'Psat7g192800' => 'psa', 'PSO017G7019' => 'pso', 'PSO063G2803' => 'pso', 'PSO063G5485' => 'pso', 'PSO170G1184' => 'pso', 'PSO210G5207' => 'pso', 'PSO782G5301' => 'pso', 'QL02p013344' => 'qlo', 'QL06p024828' => 'qlo', 'QL08p000529' => 'qlo', 'QL09p053965' => 'qlo', 'RcHm_v2.0_Chr4g0415261' => 'rch', 'RcHm_v2.0_Chr5g0074651' => 'rch', 'RcHm_v2.0_Chr6g0303791' => 'rch', 'Rhsim01G0255400' => 'rsi', 'Rhsim04G0007700' => 'rsi', 'Rhsim06G0010600' => 'rsi', 'Rhsim09G0056200' => 'rsi', 'Sabra05G0190700' => 'sbr', 'Sabra11G0137900' => 'sbr', 'Sabra16G0199400' => 'sbr', 'Sabra17G0046800' => 'sbr', 'Sabra17G0049000' => 'sbr', 'SalBow7G1352' => 'sbo', 'SalBow8G0560' => 'sbo', 'SalBow8G3132' => 'sbo', 'Sc03g0011770' => 'sci', 'Sc13g0000190' => 'sci', 'Sc26g0004500' => 'sci', 'Sed0002207' => 'sed', 'Sed0018827' => 'sed', 'Sed0026703' => 'sed', 'SEGI_03044' => 'sgi', 'SEGI_07905' => 'sgi', 'SEGI_08051' => 'sgi', 'SEGI_16568' => 'sgi', 'SEGI_20255' => 'sgi', 'SEGI_21670' => 'sgi', 'SEGI_22736' => 'sgi', 'SEGI_24820' => 'sgi', 'SEGI_28457' => 'sgi', 'SEGI_29019' => 'sgi', 'SEGI_34433' => 'sgi', 'SEGI_36133' => 'sgi', 'SEGI_37314' => 'sgi', 'SEGI_37984' => 'sgi', 'SEGI_38962' => 'sgi', 'SGA_v2.0_scaffold11G05960' => 'sas', 'SGA_v2.0_scaffold145G36109' => 'sas', 'SGA_v2.0_scaffold57G20102' => 'sas', 'SGA_v2.0_scaffold92G28174' => 'sas', 'SHI01078' => 'shi', 'SHI01084' => 'shi', 'SHI21549' => 'shi', 'SHI21553' => 'shi', 'SMO367G0512' => 'smo', 'SMO367G0741' => 'smo', 'Solyc01g011277.1' => 'sly', 'Solyc09g091960.3' => 'sly', 'Solyc12g016190.2' => 'sly', 'Solyc12g094440.2' => 'sly', 'Sopen09g034860' => 'spe', 'Sopen12g007980' => 'spe', 'Sopen12g031330' => 'spe', 'Sp1g03720' => 'spa', 'Sp1g41270' => 'spa', 'Sp3g11550' => 'spa', 'Sp4g15180' => 'spa', 'Sp5g31230' => 'spa', 'SpUn0748_0010' => 'spa', 'TAR362G1147' => 'tar', 'TAR362G1235' => 'tar', 'TAR365G1158' => 'tar', 'TAR627G0328' => 'tar', 'TAR628G0748' => 'tar', 'THA.LOC104801030' => 'tha', 'THA.LOC104810304' => 'tha', 'THA.LOC104811448' => 'tha', 'THA.LOC104822702' => 'tha', 'THA.LOC104827380' => 'tha', 'Thecc.04G201600' => 'tca', 'Thecc.04G201800' => 'tca', 'Thecc.04G203600' => 'tca', 'Thecc.07G001600' => 'tca', 'Thecc.08G053400' => 'tca', 'Thhalv10007631m.g' => 'esa', 'Thhalv10011675m.g' => 'esa', 'Thhalv10017702m.g' => 'esa', 'Thhalv10017860m.g' => 'esa', 'Thhalv10018826m.g' => 'esa', 'Thhalv10021143m.g' => 'esa', 'TPR.G10416' => 'tpr', 'TPR.G15603' => 'tpr', 'TPR.G16692' => 'tpr', 'TPR.G38136' => 'tpr', 'TWI09G0965' => 'twi', 'TWI09G1575' => 'twi', 'TWI38G2024' => 'twi', 'TWI39G1003' => 'twi', 'TWI56G0846' => 'twi', 'TWI73G1259' => 'twi', 'unitig_21.g20260' => 'ugi', 'unitig_46.g18041' => 'ugi', 'unitig_744.g24498' => 'ugi', 'unitig_747.g21678' => 'ugi', 'vmacro00473' => 'vma', 'vmacro09799' => 'vma', 'vmacro21843' => 'vma', 'VMungo0720G0565' => 'vmu', 'VMungo1080G0142' => 'vmu', 'VMungo1309G2014' => 'vmu', 'Zm00001eb203110' => 'zma', 'Zm00001eb240740' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001261', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001261' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '496', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001261' ) ), 'genes' => array( 'A04p08390' => 'bna', 'A05p17360' => 'bna', 'A05p36190' => 'bna', 'A05p36210' => 'bna', 'A05p36230' => 'bna', 'A05p36240' => 'bna', 'A05p36250' => 'bna', 'A05p36270' => 'bna', 'A06p00070' => 'bna', 'A07p41670' => 'bna', 'A08p36660' => 'bna', 'A09p67700' => 'bna', 'A10p03310' => 'bna', 'Aa31LG10G570' => 'aar', 'Aa31LG1G19880' => 'aar', 'Aa31LG4G6230' => 'aar', 'Aa31LG8G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3465' => 'aag', 'Actinidia03674' => 'ach', 'Actinidia15468' => 'ach', 'Actinidia17023' => 'ach', 'Actinidia33185' => 'ach', 'Actinidia33186' => 'ach', 'Actinidia35864' => 'ach', 'Ah.13g073330' => 'amhyb', 'Ah.13g078140' => 'amhyb', 'AL1G14600' => 'aly', 'AL2G36150' => 'aly', 'AL3G25180' => 'aly', 'AL3G25200' => 'aly', 'Aqoxy1G04297' => 'aox', 'Aqoxy2G02705' => 'aox', 'Aqoxy2G03859' => 'aox', 'Aqoxy5G01079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03HAKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5WUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P4JNJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9QP8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5DIHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFLF6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8R3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM4VCW' => 'arhy', 'AT1G04880' => 'ath', 'AT1G55650' => 'ath', 'AT1G76110' => 'ath', 'AT3G13350' => 'ath', 'ATR0661G320' => 'atr', 'ATR0693G224' => 'atr', 'ATR0751G203' => 'atr', 'ATR1145G108' => 'atr', 'Atru.chr13.200' => 'acertr', 'Atru.chr2.3895' => 'acertr', 'Atru.chr4.1702' => 'acertr', 'AUR62002429' => 'cqu', 'AUR62013853' => 'cqu', 'AUR62018594' => 'cqu', 'AUR62020824' => 'cqu', 'AUR62023759' => 'cqu', 'AUR62036747' => 'cqu', 'AUR62036749' => 'cqu', 'BcaB02g06895' => 'bca', 'BcaB02g10808' => 'bca', 'BcaB03g13467' => 'bca', 'BcaB06g25460' => 'bca', 'BcaB06g25461' => 'bca', 'BcaB06g25462' => 'bca', 'BcaB06g25463' => 'bca', 'BcaB06g25464' => 'bca', 'BcaB06g25465' => 'bca', 'BcaB06g25466' => 'bca', 'BcaB06g25467' => 'bca', 'BcaB06g25468' => 'bca', 'BcaB06g25469' => 'bca', 'BcaB07g33194' => 'bca', 'BcaB08g35798' => 'bca', 'BcaC02g09388' => 'bca', 'BcaC05g24433' => 'bca', 'BcaC05g29186' => 'bca', 'BcaC05g29187' => 'bca', 'BcaC07g36873' => 'bca', 'BcaC07g42156' => 'bca', 'BcaC08g43643' => 'bca', 'BcaC08g44208' => 'bca', 'BcaC08g47104' => 'bca', 'BcaC08g47291' => 'bca', 'BcaNung05157' => 'bca', 'BcaNung05159' => 'bca', 'BcaNung05160' => 'bca', 'BcaNung05161' => 'bca', 'BolC4t25792H' => 'bol', 'BolC5t29085H' => 'bol', 'BolC5t34121H' => 'bol', 'BolC5t34123H' => 'bol', 'BolC6t36142H' => 'bol', 'BolC6t36814H' => 'bol', 'BolC6t40044H' => 'bol', 'BolC8t46960H' => 'bol', 'BolC8t52735H' => 'bol', 'BraA04t16526Z' => 'bra', 'BraA05t20632Z' => 'bra', 'BraA05t22423Z' => 'bra', 'BraA05t22425Z' => 'bra', 'BraA05t22428Z' => 'bra', 'BraA06t23222Z' => 'bra', 'BraA07t31696Z' => 'bra', 'BraA08t35569Z' => 'bra', 'BraA09t42100Z' => 'bra', 'BraA10t42607Z' => 'bra', 'C04p42090' => 'bna', 'C05p03030' => 'bna', 'C05p54550' => 'bna', 'C05p54570' => 'bna', 'C06p10620' => 'bna', 'C06p16170' => 'bna', 'C06p50050' => 'bna', 'C08p01550' => 'bna', 'C08p52030' => 'bna', 'CAN.G1635.7' => 'can', 'CAN.G268.3' => 'can', 'CAN.G401.12' => 'can', 'CAN.G401.4' => 'can', 'CAN.G401.6' => 'can', 'CAN.G8.47' => 'can', 'CANSAT11G1516' => 'cansat', 'CANSAT25G2358' => 'cansat', 'CANSAT78G1324' => 'cansat', 'CARHR004270' => 'chi', 'CARHR069650' => 'chi', 'CARHR087960' => 'chi', 'Carub.0001s0412' => 'cru', 'Carub.0001s3629' => 'cru', 'Carub.0001s4417' => 'cru', 'Carub.0002s0846' => 'cru', 'Carub.0002s0851' => 'cru', 'Carub.0002s0854' => 'cru', 'Carub.0002s2299' => 'cru', 'Carub.0003s1273' => 'cru', 'Carub.0004s1422' => 'cru', 'Carub.0007s3214' => 'cru', 'Ca_11377_v3' => 'car', 'Ca_14139_v3' => 'car', 'Ca_15451_v3' => 'car', 'CBR_g48690' => 'cbr', 'Cc03_g07860' => 'ccan', 'Cc05_g15700' => 'ccan', 'Cc10_g01010' => 'ccan', 'CDE02G0773' => 'cde', 'CDE02G4389' => 'cde', 'CDE03G0487' => 'cde', 'CDE04G1419' => 'cde', 'CDE06G2760' => 'cde', 'CDE06G2769' => 'cde', 'Cfa014019' => 'cfa', 'Cfa014913' => 'cfa', 'Cfa016960' => 'cfa', 'Ciclev10001816m.g' => 'ccl', 'Ciclev10005091m.g' => 'ccl', 'Ciclev10008919m.g' => 'ccl', 'CiPaw.01G121000' => 'cil', 'CiPaw.02G066300' => 'cil', 'CiPaw.07G142500' => 'cil', 'CiPaw.09G129700' => 'cil', 'CiPaw.11G210600' => 'cil', 'CiPaw.12G142500' => 'cil', 'ClCG05G015360' => 'cla', 'ClCG06G007770' => 'cla', 'COL.COLO4_07788' => 'col', 'COL.COLO4_09888' => 'col', 'COL.COLO4_26067' => 'col', 'Cpa.g.sc1068.1' => 'cpa', 'Cpa.g.sc12.68' => 'cpa', 'Cpa.g.sc26.248' => 'cpa', 'Cre13.g571050' => 'cre', 'CsaV3_2G011520' => 'csa', 'CsaV3_4G037000' => 'csa', 'CSS0037068' => 'camsi', 'CSS0039401' => 'camsi', 'CSS0043696' => 'camsi', 'CSS0046638' => 'camsi', 'CSS0047336' => 'camsi', 'CSS0050103' => 'camsi', 'DCAR_013758' => 'dca', 'DCAR_017610' => 'dca', 'DCAR_024473' => 'dca', 'DCAR_026613' => 'dca', 'Dinv03680' => 'din', 'Dinv12686' => 'din', 'Dinv19195' => 'din', 'Dinv19644' => 'din', 'Dinv27237' => 'din', 'Dinv31906' => 'din', 'Dinv38233' => 'din', 'Dinv39562' => 'din', 'Dinv40915' => 'din', 'Duzib041G0438' => 'dzi', 'Duzib093G0420' => 'dzi', 'Duzib116G0121' => 'dzi', 'Duzib212G0740' => 'dzi', 'Duzib213G0274' => 'dzi', 'Duzib268G0395' => 'dzi', 'Duzib268G0907' => 'dzi', 'ECA232G0527' => 'eca', 'ECA238G1605' => 'eca', 'ECA240G2895' => 'eca', 'ECA248G3338' => 'eca', 'EL10Ac1g02053' => 'bvu', 'EL10Ac3g06122' => 'bvu', 'EL10Ac3g07478' => 'bvu', 'Eucgr.F01991' => 'egr', 'Eucgr.F03526' => 'egr', 'Eucgr.H00052' => 'egr', 'FAN07G2115' => 'fan', 'FAN11G1862' => 'fan', 'FAN12G3417' => 'fan', 'FAN15G0503' => 'fan', 'FAN16G2494' => 'fan', 'FAN17G1455' => 'fan', 'FAN20G1477' => 'fan', 'FAN21G2040' => 'fan', 'FAN22G0086' => 'fan', 'FAN25G3495' => 'fan', 'FAN27G0685' => 'fan', 'FvH4_3g41610' => 'fve', 'FvH4_4g16370' => 'fve', 'Glyma.04G020000' => 'gma', 'Glyma.04G113000' => 'gma', 'Glyma.06G321700' => 'gma', 'Glyma.10G294000' => 'gma', 'Glyma.10G294100' => 'gma', 'Glyma.20G243900' => 'gma', 'Gohir.A03G094500' => 'ghi', 'Gohir.A05G182100' => 'ghi', 'Gohir.A10G124901' => 'ghi', 'Gohir.A13G128500' => 'ghi', 'Gohir.D02G123900' => 'ghi', 'Gohir.D05G185100' => 'ghi', 'Gohir.D10G141600' => 'ghi', 'Gohir.D13G131900' => 'ghi', 'Gorai.002G194700' => 'gra', 'Gorai.005G130200' => 'gra', 'Gorai.009G190400' => 'gra', 'Gorai.011G157600' => 'gra', 'Gorai.013G147900' => 'gra', 'GSVIVG01008723001' => 'vvi', 'GSVIVG01014843001' => 'vvi', 'GSVIVG01021061001' => 'vvi', 'HanXRQChr03g0077881' => 'han', 'HanXRQChr04g0114861' => 'han', 'HanXRQChr14g0435981' => 'han', 'Haze_09915' => 'cav', 'Haze_11610' => 'cav', 'Haze_22726' => 'cav', 'Hma1.2p1_0383F.1_g140250' => 'hma', 'Hma1.2p1_0383F.1_g140260' => 'hma', 'Hma1.2p1_1407F.1_g281450' => 'hma', 'HPP92_003491' => 'vpl', 'HPP92_008114' => 'vpl', 'HPP92_009907' => 'vpl', 'HPP92_020464' => 'vpl', 'HPP92_026168' => 'vpl', 'HPP92_026889' => 'vpl', 'Hund05144' => 'sun', 'Hund22972' => 'sun', 'Lalb_Chr02g0144151' => 'lal', 'Lalb_Chr08g0246331' => 'lal', 'Lalb_Chr11g0061761' => 'lal', 'Lalb_Chr11g0061771' => 'lal', 'Lalb_Chr11g0072731' => 'lal', 'Lalb_Chr18g0048641' => 'lal', 'Lalb_Chr21g0307471' => 'lal', 'Lj1g0016144' => 'lja', 'Lj1g0016814' => 'lja', 'Lj1g0017531' => 'lja', 'Lj3g0005977' => 'lja', 'Lj4A16T126' => 'lonja', 'Lj5g0016874' => 'lja', 'Lj6A553G29' => 'lonja', 'Lj8A183T36' => 'lonja', 'Lsat_1_v5_gn_1_71820' => 'lsa', 'Lsat_1_v5_gn_2_44980' => 'lsa', 'Lsat_1_v5_gn_9_46720' => 'lsa', 'Lsat_1_v5_gn_9_88540' => 'lsa', 'Manes.03G147600' => 'mes', 'Manes.05G204800' => 'mes', 'Manes.15G053800' => 'mes', 'Manes.18G008500' => 'mes', 'Mapoly0043s0128' => 'mpo', 'MBI01_g25650_MAGBIO' => 'mbi', 'MBI03_g39993_MAGBIO' => 'mbi', 'MBI05_g05627_MAGBIO' => 'mbi', 'MBI05_g05629_MAGBIO' => 'mbi', 'MBI05_g24485_MAGBIO' => 'mbi', 'MBI08_g40331_MAGBIO' => 'mbi', 'MBI08_g42718_MAGBIO' => 'mbi', 'MBI09_g14588_MAGBIO' => 'mbi', 'MBI10_g22588_MAGBIO' => 'mbi', 'MBI12_g45469_MAGBIO' => 'mbi', 'MBI14_g29305_MAGBIO' => 'mbi', 'MBI14_g47062_MAGBIO' => 'mbi', 'MBI15_g44393_MAGBIO' => 'mbi', 'MBI16_g37640_MAGBIO' => 'mbi', 'MBI18_g09847_MAGBIO' => 'mbi', 'MBI19_g14784_MAGBIO' => 'mbi', 'MD03G1042900' => 'mdo', 'MD04G1008800' => 'mdo', 'MD08G1006400' => 'mdo', 'MD11G1045900' => 'mdo', 'MD13G1138800' => 'mdo', 'MD15G1005800' => 'mdo', 'Medtr1g116180' => 'mtr', 'Medtr3g009890' => 'mtr', 'Medtr3g114920' => 'mtr', 'Medtr7g005970' => 'mtr', 'MELO3C016999.2' => 'cme', 'MELO3C020449.2' => 'cme', 'MELO3C028458.2' => 'cme', 'Migut.C00909' => 'egut', 'Migut.G00695' => 'egut', 'Migut.H01714' => 'egut', 'MSTRG.13044' => 'ama', 'MSTRG.14524' => 'ama', 'Nitab4.5_0000498g0170' => 'nta', 'Nitab4.5_0000898g0060' => 'nta', 'Nitab4.5_0000898g0160' => 'nta', 'Nitab4.5_0002216g0010' => 'nta', 'Nitab4.5_0002353g0020' => 'nta', 'Nitab4.5_0003570g0010' => 'nta', 'Nitab4.5_0019106g0010' => 'nta', 'Nn1g07633' => 'nnu', 'Nn1g07879' => 'nnu', 'Nn3g17439' => 'nnu', 'Nn3g20036' => 'nnu', 'Nn5g30235' => 'nnu', 'Nn5g30869' => 'nnu', 'Nn6g31871' => 'nnu', 'Nn6g34418' => 'nnu', 'Oeu006262.2' => 'oeu', 'Oeu013804.1' => 'oeu', 'Oeu019804.1' => 'oeu', 'Oeu019807.1' => 'oeu', 'Oeu019814.1' => 'oeu', 'Oeu019815.1' => 'oeu', 'Oeu022371.1' => 'oeu', 'Oeu034575.1' => 'oeu', 'Oeu034576.1' => 'oeu', 'Oeu041363.1' => 'oeu', 'Oeu055360.1' => 'oeu', 'Oeu064068.1' => 'oeu', 'Os02g0469900' => 'osa', 'Peaxi162Scf00047g00519' => 'pax', 'Peaxi162Scf00064g00829' => 'pax', 'Peaxi162Scf15341g00003' => 'pax', 'PGR031G2500' => 'pgr', 'PGR083G2486' => 'pgr', 'PGR142G3678' => 'pgr', 'PGSC0003DMG400029327' => 'stu', 'PGSC0003DMG400031288' => 'stu', 'PGSC0003DMG401018896' => 'stu', 'PGSC0003DMG402018896' => 'stu', 'Phvul.005G004300' => 'pvu', 'Phvul.007G006000' => 'pvu', 'Phvul.007G006100' => 'pvu', 'Phvul.009G020700' => 'pvu', 'Potri.001G315200' => 'ptr', 'Potri.005G246700' => 'ptr', 'Potri.011G168800' => 'ptr', 'Potri.017G055200' => 'ptr', 'Pp3c1_33100' => 'ppa', 'Pp3c7_23660' => 'ppa', 'Prupe.1G008100' => 'ppe', 'Prupe.1G358300' => 'ppe', 'Prupe.6G035300' => 'ppe', 'Psat0s2083g0160' => 'psa', 'Psat0s2083g0240' => 'psa', 'Psat0s2228g0080' => 'psa', 'Psat3g107360' => 'psa', 'Psat5g011640' => 'psa', 'Psat5g231880' => 'psa', 'Psat6g240880' => 'psa', 'Psat6g240920' => 'psa', 'Psat7g039280' => 'psa', 'Psat7g043960' => 'psa', 'Psat7g192760' => 'psa', 'Psat7g192800' => 'psa', 'PSO017G7019' => 'pso', 'PSO063G2803' => 'pso', 'PSO063G5485' => 'pso', 'PSO170G1184' => 'pso', 'PSO210G5207' => 'pso', 'PSO782G5301' => 'pso', 'QL02p013344' => 'qlo', 'QL06p024828' => 'qlo', 'QL08p000529' => 'qlo', 'QL09p053965' => 'qlo', 'RcHm_v2.0_Chr4g0415261' => 'rch', 'RcHm_v2.0_Chr5g0074651' => 'rch', 'RcHm_v2.0_Chr6g0303791' => 'rch', 'Rhsim01G0255400' => 'rsi', 'Rhsim04G0007700' => 'rsi', 'Rhsim06G0010600' => 'rsi', 'Rhsim09G0056200' => 'rsi', 'Sabra05G0190700' => 'sbr', 'Sabra11G0137900' => 'sbr', 'Sabra16G0199400' => 'sbr', 'Sabra17G0046800' => 'sbr', 'Sabra17G0049000' => 'sbr', 'SalBow7G1352' => 'sbo', 'SalBow8G0560' => 'sbo', 'SalBow8G3132' => 'sbo', 'Sc03g0011770' => 'sci', 'Sc13g0000190' => 'sci', 'Sc26g0004500' => 'sci', 'Sed0002207' => 'sed', 'Sed0018827' => 'sed', 'Sed0026703' => 'sed', 'SEGI_03044' => 'sgi', 'SEGI_07905' => 'sgi', 'SEGI_08051' => 'sgi', 'SEGI_16568' => 'sgi', 'SEGI_20255' => 'sgi', 'SEGI_21670' => 'sgi', 'SEGI_22736' => 'sgi', 'SEGI_24820' => 'sgi', 'SEGI_28457' => 'sgi', 'SEGI_29019' => 'sgi', 'SEGI_34433' => 'sgi', 'SEGI_36133' => 'sgi', 'SEGI_37314' => 'sgi', 'SEGI_37984' => 'sgi', 'SEGI_38962' => 'sgi', 'SGA_v2.0_scaffold11G05960' => 'sas', 'SGA_v2.0_scaffold145G36109' => 'sas', 'SGA_v2.0_scaffold57G20102' => 'sas', 'SGA_v2.0_scaffold92G28174' => 'sas', 'SHI01078' => 'shi', 'SHI01084' => 'shi', 'SHI21549' => 'shi', 'SHI21553' => 'shi', 'SMO367G0512' => 'smo', 'SMO367G0741' => 'smo', 'Solyc01g011277.1' => 'sly', 'Solyc09g091960.3' => 'sly', 'Solyc12g016190.2' => 'sly', 'Solyc12g094440.2' => 'sly', 'Sopen09g034860' => 'spe', 'Sopen12g007980' => 'spe', 'Sopen12g031330' => 'spe', 'Sp1g03720' => 'spa', 'Sp1g41270' => 'spa', 'Sp3g11550' => 'spa', 'Sp4g15180' => 'spa', 'Sp5g31230' => 'spa', 'SpUn0748_0010' => 'spa', 'TAR362G1147' => 'tar', 'TAR362G1235' => 'tar', 'TAR365G1158' => 'tar', 'TAR627G0328' => 'tar', 'TAR628G0748' => 'tar', 'THA.LOC104801030' => 'tha', 'THA.LOC104810304' => 'tha', 'THA.LOC104811448' => 'tha', 'THA.LOC104822702' => 'tha', 'THA.LOC104827380' => 'tha', 'Thecc.04G201600' => 'tca', 'Thecc.04G201800' => 'tca', 'Thecc.04G203600' => 'tca', 'Thecc.07G001600' => 'tca', 'Thecc.08G053400' => 'tca', 'Thhalv10007631m.g' => 'esa', 'Thhalv10011675m.g' => 'esa', 'Thhalv10017702m.g' => 'esa', 'Thhalv10017860m.g' => 'esa', 'Thhalv10018826m.g' => 'esa', 'Thhalv10021143m.g' => 'esa', 'TPR.G10416' => 'tpr', 'TPR.G15603' => 'tpr', 'TPR.G16692' => 'tpr', 'TPR.G38136' => 'tpr', 'TWI09G0965' => 'twi', 'TWI09G1575' => 'twi', 'TWI38G2024' => 'twi', 'TWI39G1003' => 'twi', 'TWI56G0846' => 'twi', 'TWI73G1259' => 'twi', 'unitig_21.g20260' => 'ugi', 'unitig_46.g18041' => 'ugi', 'unitig_744.g24498' => 'ugi', 'unitig_747.g21678' => 'ugi', 'vmacro00473' => 'vma', 'vmacro09799' => 'vma', 'vmacro21843' => 'vma', 'VMungo0720G0565' => 'vmu', 'VMungo1080G0142' => 'vmu', 'VMungo1309G2014' => 'vmu', 'Zm00001eb203110' => 'zma', 'Zm00001eb240740' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001261' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001261' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001261' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001261' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '496', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A04p08390' => 'bna', 'A05p17360' => 'bna', 'A05p36190' => 'bna', 'A05p36210' => 'bna', 'A05p36230' => 'bna', 'A05p36240' => 'bna', 'A05p36250' => 'bna', 'A05p36270' => 'bna', 'A06p00070' => 'bna', 'A07p41670' => 'bna', 'A08p36660' => 'bna', 'A09p67700' => 'bna', 'A10p03310' => 'bna', 'Aa31LG10G570' => 'aar', 'Aa31LG1G19880' => 'aar', 'Aa31LG4G6230' => 'aar', 'Aa31LG8G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3465' => 'aag', 'Actinidia03674' => 'ach', 'Actinidia15468' => 'ach', 'Actinidia17023' => 'ach', 'Actinidia33185' => 'ach', 'Actinidia33186' => 'ach', 'Actinidia35864' => 'ach', 'Ah.13g073330' => 'amhyb', 'Ah.13g078140' => 'amhyb', 'AL1G14600' => 'aly', 'AL2G36150' => 'aly', 'AL3G25180' => 'aly', 'AL3G25200' => 'aly', 'Aqoxy1G04297' => 'aox', 'Aqoxy2G02705' => 'aox', 'Aqoxy2G03859' => 'aox', 'Aqoxy5G01079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03HAKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5WUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P4JNJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9QP8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5DIHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFLF6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8R3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM4VCW' => 'arhy', 'AT1G04880' => 'ath', 'AT1G55650' => 'ath', 'AT1G76110' => 'ath', 'AT3G13350' => 'ath', 'ATR0661G320' => 'atr', 'ATR0693G224' => 'atr', 'ATR0751G203' => 'atr', 'ATR1145G108' => 'atr', 'Atru.chr13.200' => 'acertr', 'Atru.chr2.3895' => 'acertr', 'Atru.chr4.1702' => 'acertr', 'AUR62002429' => 'cqu', 'AUR62013853' => 'cqu', 'AUR62018594' => 'cqu', 'AUR62020824' => 'cqu', 'AUR62023759' => 'cqu', 'AUR62036747' => 'cqu', 'AUR62036749' => 'cqu', 'BcaB02g06895' => 'bca', 'BcaB02g10808' => 'bca', 'BcaB03g13467' => 'bca', 'BcaB06g25460' => 'bca', 'BcaB06g25461' => 'bca', 'BcaB06g25462' => 'bca', 'BcaB06g25463' => 'bca', 'BcaB06g25464' => 'bca', 'BcaB06g25465' => 'bca', 'BcaB06g25466' => 'bca', 'BcaB06g25467' => 'bca', 'BcaB06g25468' => 'bca', 'BcaB06g25469' => 'bca', 'BcaB07g33194' => 'bca', 'BcaB08g35798' => 'bca', 'BcaC02g09388' => 'bca', 'BcaC05g24433' => 'bca', 'BcaC05g29186' => 'bca', 'BcaC05g29187' => 'bca', 'BcaC07g36873' => 'bca', 'BcaC07g42156' => 'bca', 'BcaC08g43643' => 'bca', 'BcaC08g44208' => 'bca', 'BcaC08g47104' => 'bca', 'BcaC08g47291' => 'bca', 'BcaNung05157' => 'bca', 'BcaNung05159' => 'bca', 'BcaNung05160' => 'bca', 'BcaNung05161' => 'bca', 'BolC4t25792H' => 'bol', 'BolC5t29085H' => 'bol', 'BolC5t34121H' => 'bol', 'BolC5t34123H' => 'bol', 'BolC6t36142H' => 'bol', 'BolC6t36814H' => 'bol', 'BolC6t40044H' => 'bol', 'BolC8t46960H' => 'bol', 'BolC8t52735H' => 'bol', 'BraA04t16526Z' => 'bra', 'BraA05t20632Z' => 'bra', 'BraA05t22423Z' => 'bra', 'BraA05t22425Z' => 'bra', 'BraA05t22428Z' => 'bra', 'BraA06t23222Z' => 'bra', 'BraA07t31696Z' => 'bra', 'BraA08t35569Z' => 'bra', 'BraA09t42100Z' => 'bra', 'BraA10t42607Z' => 'bra', 'C04p42090' => 'bna', 'C05p03030' => 'bna', 'C05p54550' => 'bna', 'C05p54570' => 'bna', 'C06p10620' => 'bna', 'C06p16170' => 'bna', 'C06p50050' => 'bna', 'C08p01550' => 'bna', 'C08p52030' => 'bna', 'CAN.G1635.7' => 'can', 'CAN.G268.3' => 'can', 'CAN.G401.12' => 'can', 'CAN.G401.4' => 'can', 'CAN.G401.6' => 'can', 'CAN.G8.47' => 'can', 'CANSAT11G1516' => 'cansat', 'CANSAT25G2358' => 'cansat', 'CANSAT78G1324' => 'cansat', 'CARHR004270' => 'chi', 'CARHR069650' => 'chi', 'CARHR087960' => 'chi', 'Carub.0001s0412' => 'cru', 'Carub.0001s3629' => 'cru', 'Carub.0001s4417' => 'cru', 'Carub.0002s0846' => 'cru', 'Carub.0002s0851' => 'cru', 'Carub.0002s0854' => 'cru', 'Carub.0002s2299' => 'cru', 'Carub.0003s1273' => 'cru', 'Carub.0004s1422' => 'cru', 'Carub.0007s3214' => 'cru', 'Ca_11377_v3' => 'car', 'Ca_14139_v3' => 'car', 'Ca_15451_v3' => 'car', 'CBR_g48690' => 'cbr', 'Cc03_g07860' => 'ccan', 'Cc05_g15700' => 'ccan', 'Cc10_g01010' => 'ccan', 'CDE02G0773' => 'cde', 'CDE02G4389' => 'cde', 'CDE03G0487' => 'cde', 'CDE04G1419' => 'cde', 'CDE06G2760' => 'cde', 'CDE06G2769' => 'cde', 'Cfa014019' => 'cfa', 'Cfa014913' => 'cfa', 'Cfa016960' => 'cfa', 'Ciclev10001816m.g' => 'ccl', 'Ciclev10005091m.g' => 'ccl', 'Ciclev10008919m.g' => 'ccl', 'CiPaw.01G121000' => 'cil', 'CiPaw.02G066300' => 'cil', 'CiPaw.07G142500' => 'cil', 'CiPaw.09G129700' => 'cil', 'CiPaw.11G210600' => 'cil', 'CiPaw.12G142500' => 'cil', 'ClCG05G015360' => 'cla', 'ClCG06G007770' => 'cla', 'COL.COLO4_07788' => 'col', 'COL.COLO4_09888' => 'col', 'COL.COLO4_26067' => 'col', 'Cpa.g.sc1068.1' => 'cpa', 'Cpa.g.sc12.68' => 'cpa', 'Cpa.g.sc26.248' => 'cpa', 'Cre13.g571050' => 'cre', 'CsaV3_2G011520' => 'csa', 'CsaV3_4G037000' => 'csa', 'CSS0037068' => 'camsi', 'CSS0039401' => 'camsi', 'CSS0043696' => 'camsi', 'CSS0046638' => 'camsi', 'CSS0047336' => 'camsi', 'CSS0050103' => 'camsi', 'DCAR_013758' => 'dca', 'DCAR_017610' => 'dca', 'DCAR_024473' => 'dca', 'DCAR_026613' => 'dca', 'Dinv03680' => 'din', 'Dinv12686' => 'din', 'Dinv19195' => 'din', 'Dinv19644' => 'din', 'Dinv27237' => 'din', 'Dinv31906' => 'din', 'Dinv38233' => 'din', 'Dinv39562' => 'din', 'Dinv40915' => 'din', 'Duzib041G0438' => 'dzi', 'Duzib093G0420' => 'dzi', 'Duzib116G0121' => 'dzi', 'Duzib212G0740' => 'dzi', 'Duzib213G0274' => 'dzi', 'Duzib268G0395' => 'dzi', 'Duzib268G0907' => 'dzi', 'ECA232G0527' => 'eca', 'ECA238G1605' => 'eca', 'ECA240G2895' => 'eca', 'ECA248G3338' => 'eca', 'EL10Ac1g02053' => 'bvu', 'EL10Ac3g06122' => 'bvu', 'EL10Ac3g07478' => 'bvu', 'Eucgr.F01991' => 'egr', 'Eucgr.F03526' => 'egr', 'Eucgr.H00052' => 'egr', 'FAN07G2115' => 'fan', 'FAN11G1862' => 'fan', 'FAN12G3417' => 'fan', 'FAN15G0503' => 'fan', 'FAN16G2494' => 'fan', 'FAN17G1455' => 'fan', 'FAN20G1477' => 'fan', 'FAN21G2040' => 'fan', 'FAN22G0086' => 'fan', 'FAN25G3495' => 'fan', 'FAN27G0685' => 'fan', 'FvH4_3g41610' => 'fve', 'FvH4_4g16370' => 'fve', 'Glyma.04G020000' => 'gma', 'Glyma.04G113000' => 'gma', 'Glyma.06G321700' => 'gma', 'Glyma.10G294000' => 'gma', 'Glyma.10G294100' => 'gma', 'Glyma.20G243900' => 'gma', 'Gohir.A03G094500' => 'ghi', 'Gohir.A05G182100' => 'ghi', 'Gohir.A10G124901' => 'ghi', 'Gohir.A13G128500' => 'ghi', 'Gohir.D02G123900' => 'ghi', 'Gohir.D05G185100' => 'ghi', 'Gohir.D10G141600' => 'ghi', 'Gohir.D13G131900' => 'ghi', 'Gorai.002G194700' => 'gra', 'Gorai.005G130200' => 'gra', 'Gorai.009G190400' => 'gra', 'Gorai.011G157600' => 'gra', 'Gorai.013G147900' => 'gra', 'GSVIVG01008723001' => 'vvi', 'GSVIVG01014843001' => 'vvi', 'GSVIVG01021061001' => 'vvi', 'HanXRQChr03g0077881' => 'han', 'HanXRQChr04g0114861' => 'han', 'HanXRQChr14g0435981' => 'han', 'Haze_09915' => 'cav', 'Haze_11610' => 'cav', 'Haze_22726' => 'cav', 'Hma1.2p1_0383F.1_g140250' => 'hma', 'Hma1.2p1_0383F.1_g140260' => 'hma', 'Hma1.2p1_1407F.1_g281450' => 'hma', 'HPP92_003491' => 'vpl', 'HPP92_008114' => 'vpl', 'HPP92_009907' => 'vpl', 'HPP92_020464' => 'vpl', 'HPP92_026168' => 'vpl', 'HPP92_026889' => 'vpl', 'Hund05144' => 'sun', 'Hund22972' => 'sun', 'Lalb_Chr02g0144151' => 'lal', 'Lalb_Chr08g0246331' => 'lal', 'Lalb_Chr11g0061761' => 'lal', 'Lalb_Chr11g0061771' => 'lal', 'Lalb_Chr11g0072731' => 'lal', 'Lalb_Chr18g0048641' => 'lal', 'Lalb_Chr21g0307471' => 'lal', 'Lj1g0016144' => 'lja', 'Lj1g0016814' => 'lja', 'Lj1g0017531' => 'lja', 'Lj3g0005977' => 'lja', 'Lj4A16T126' => 'lonja', 'Lj5g0016874' => 'lja', 'Lj6A553G29' => 'lonja', 'Lj8A183T36' => 'lonja', 'Lsat_1_v5_gn_1_71820' => 'lsa', 'Lsat_1_v5_gn_2_44980' => 'lsa', 'Lsat_1_v5_gn_9_46720' => 'lsa', 'Lsat_1_v5_gn_9_88540' => 'lsa', 'Manes.03G147600' => 'mes', 'Manes.05G204800' => 'mes', 'Manes.15G053800' => 'mes', 'Manes.18G008500' => 'mes', 'Mapoly0043s0128' => 'mpo', 'MBI01_g25650_MAGBIO' => 'mbi', 'MBI03_g39993_MAGBIO' => 'mbi', 'MBI05_g05627_MAGBIO' => 'mbi', 'MBI05_g05629_MAGBIO' => 'mbi', 'MBI05_g24485_MAGBIO' => 'mbi', 'MBI08_g40331_MAGBIO' => 'mbi', 'MBI08_g42718_MAGBIO' => 'mbi', 'MBI09_g14588_MAGBIO' => 'mbi', 'MBI10_g22588_MAGBIO' => 'mbi', 'MBI12_g45469_MAGBIO' => 'mbi', 'MBI14_g29305_MAGBIO' => 'mbi', 'MBI14_g47062_MAGBIO' => 'mbi', 'MBI15_g44393_MAGBIO' => 'mbi', 'MBI16_g37640_MAGBIO' => 'mbi', 'MBI18_g09847_MAGBIO' => 'mbi', 'MBI19_g14784_MAGBIO' => 'mbi', 'MD03G1042900' => 'mdo', 'MD04G1008800' => 'mdo', 'MD08G1006400' => 'mdo', 'MD11G1045900' => 'mdo', 'MD13G1138800' => 'mdo', 'MD15G1005800' => 'mdo', 'Medtr1g116180' => 'mtr', 'Medtr3g009890' => 'mtr', 'Medtr3g114920' => 'mtr', 'Medtr7g005970' => 'mtr', 'MELO3C016999.2' => 'cme', 'MELO3C020449.2' => 'cme', 'MELO3C028458.2' => 'cme', 'Migut.C00909' => 'egut', 'Migut.G00695' => 'egut', 'Migut.H01714' => 'egut', 'MSTRG.13044' => 'ama', 'MSTRG.14524' => 'ama', 'Nitab4.5_0000498g0170' => 'nta', 'Nitab4.5_0000898g0060' => 'nta', 'Nitab4.5_0000898g0160' => 'nta', 'Nitab4.5_0002216g0010' => 'nta', 'Nitab4.5_0002353g0020' => 'nta', 'Nitab4.5_0003570g0010' => 'nta', 'Nitab4.5_0019106g0010' => 'nta', 'Nn1g07633' => 'nnu', 'Nn1g07879' => 'nnu', 'Nn3g17439' => 'nnu', 'Nn3g20036' => 'nnu', 'Nn5g30235' => 'nnu', 'Nn5g30869' => 'nnu', 'Nn6g31871' => 'nnu', 'Nn6g34418' => 'nnu', 'Oeu006262.2' => 'oeu', 'Oeu013804.1' => 'oeu', 'Oeu019804.1' => 'oeu', 'Oeu019807.1' => 'oeu', 'Oeu019814.1' => 'oeu', 'Oeu019815.1' => 'oeu', 'Oeu022371.1' => 'oeu', 'Oeu034575.1' => 'oeu', 'Oeu034576.1' => 'oeu', 'Oeu041363.1' => 'oeu', 'Oeu055360.1' => 'oeu', 'Oeu064068.1' => 'oeu', 'Os02g0469900' => 'osa', 'Peaxi162Scf00047g00519' => 'pax', 'Peaxi162Scf00064g00829' => 'pax', 'Peaxi162Scf15341g00003' => 'pax', 'PGR031G2500' => 'pgr', 'PGR083G2486' => 'pgr', 'PGR142G3678' => 'pgr', 'PGSC0003DMG400029327' => 'stu', 'PGSC0003DMG400031288' => 'stu', 'PGSC0003DMG401018896' => 'stu', 'PGSC0003DMG402018896' => 'stu', 'Phvul.005G004300' => 'pvu', 'Phvul.007G006000' => 'pvu', 'Phvul.007G006100' => 'pvu', 'Phvul.009G020700' => 'pvu', 'Potri.001G315200' => 'ptr', 'Potri.005G246700' => 'ptr', 'Potri.011G168800' => 'ptr', 'Potri.017G055200' => 'ptr', 'Pp3c1_33100' => 'ppa', 'Pp3c7_23660' => 'ppa', 'Prupe.1G008100' => 'ppe', 'Prupe.1G358300' => 'ppe', 'Prupe.6G035300' => 'ppe', 'Psat0s2083g0160' => 'psa', 'Psat0s2083g0240' => 'psa', 'Psat0s2228g0080' => 'psa', 'Psat3g107360' => 'psa', 'Psat5g011640' => 'psa', 'Psat5g231880' => 'psa', 'Psat6g240880' => 'psa', 'Psat6g240920' => 'psa', 'Psat7g039280' => 'psa', 'Psat7g043960' => 'psa', 'Psat7g192760' => 'psa', 'Psat7g192800' => 'psa', 'PSO017G7019' => 'pso', 'PSO063G2803' => 'pso', 'PSO063G5485' => 'pso', 'PSO170G1184' => 'pso', 'PSO210G5207' => 'pso', 'PSO782G5301' => 'pso', 'QL02p013344' => 'qlo', 'QL06p024828' => 'qlo', 'QL08p000529' => 'qlo', 'QL09p053965' => 'qlo', 'RcHm_v2.0_Chr4g0415261' => 'rch', 'RcHm_v2.0_Chr5g0074651' => 'rch', 'RcHm_v2.0_Chr6g0303791' => 'rch', 'Rhsim01G0255400' => 'rsi', 'Rhsim04G0007700' => 'rsi', 'Rhsim06G0010600' => 'rsi', 'Rhsim09G0056200' => 'rsi', 'Sabra05G0190700' => 'sbr', 'Sabra11G0137900' => 'sbr', 'Sabra16G0199400' => 'sbr', 'Sabra17G0046800' => 'sbr', 'Sabra17G0049000' => 'sbr', 'SalBow7G1352' => 'sbo', 'SalBow8G0560' => 'sbo', 'SalBow8G3132' => 'sbo', 'Sc03g0011770' => 'sci', 'Sc13g0000190' => 'sci', 'Sc26g0004500' => 'sci', 'Sed0002207' => 'sed', 'Sed0018827' => 'sed', 'Sed0026703' => 'sed', 'SEGI_03044' => 'sgi', 'SEGI_07905' => 'sgi', 'SEGI_08051' => 'sgi', 'SEGI_16568' => 'sgi', 'SEGI_20255' => 'sgi', 'SEGI_21670' => 'sgi', 'SEGI_22736' => 'sgi', 'SEGI_24820' => 'sgi', 'SEGI_28457' => 'sgi', 'SEGI_29019' => 'sgi', 'SEGI_34433' => 'sgi', 'SEGI_36133' => 'sgi', 'SEGI_37314' => 'sgi', 'SEGI_37984' => 'sgi', 'SEGI_38962' => 'sgi', 'SGA_v2.0_scaffold11G05960' => 'sas', 'SGA_v2.0_scaffold145G36109' => 'sas', 'SGA_v2.0_scaffold57G20102' => 'sas', 'SGA_v2.0_scaffold92G28174' => 'sas', 'SHI01078' => 'shi', 'SHI01084' => 'shi', 'SHI21549' => 'shi', 'SHI21553' => 'shi', 'SMO367G0512' => 'smo', 'SMO367G0741' => 'smo', 'Solyc01g011277.1' => 'sly', 'Solyc09g091960.3' => 'sly', 'Solyc12g016190.2' => 'sly', 'Solyc12g094440.2' => 'sly', 'Sopen09g034860' => 'spe', 'Sopen12g007980' => 'spe', 'Sopen12g031330' => 'spe', 'Sp1g03720' => 'spa', 'Sp1g41270' => 'spa', 'Sp3g11550' => 'spa', 'Sp4g15180' => 'spa', 'Sp5g31230' => 'spa', 'SpUn0748_0010' => 'spa', 'TAR362G1147' => 'tar', 'TAR362G1235' => 'tar', 'TAR365G1158' => 'tar', 'TAR627G0328' => 'tar', 'TAR628G0748' => 'tar', 'THA.LOC104801030' => 'tha', 'THA.LOC104810304' => 'tha', 'THA.LOC104811448' => 'tha', 'THA.LOC104822702' => 'tha', 'THA.LOC104827380' => 'tha', 'Thecc.04G201600' => 'tca', 'Thecc.04G201800' => 'tca', 'Thecc.04G203600' => 'tca', 'Thecc.07G001600' => 'tca', 'Thecc.08G053400' => 'tca', 'Thhalv10007631m.g' => 'esa', 'Thhalv10011675m.g' => 'esa', 'Thhalv10017702m.g' => 'esa', 'Thhalv10017860m.g' => 'esa', 'Thhalv10018826m.g' => 'esa', 'Thhalv10021143m.g' => 'esa', 'TPR.G10416' => 'tpr', 'TPR.G15603' => 'tpr', 'TPR.G16692' => 'tpr', 'TPR.G38136' => 'tpr', 'TWI09G0965' => 'twi', 'TWI09G1575' => 'twi', 'TWI38G2024' => 'twi', 'TWI39G1003' => 'twi', 'TWI56G0846' => 'twi', 'TWI73G1259' => 'twi', 'unitig_21.g20260' => 'ugi', 'unitig_46.g18041' => 'ugi', 'unitig_744.g24498' => 'ugi', 'unitig_747.g21678' => 'ugi', 'vmacro00473' => 'vma', 'vmacro09799' => 'vma', 'vmacro21843' => 'vma', 'VMungo0720G0565' => 'vmu', 'VMungo1080G0142' => 'vmu', 'VMungo1309G2014' => 'vmu', 'Zm00001eb203110' => 'zma', 'Zm00001eb240740' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001261', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001261' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001261', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '496', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001261' ) ), 'genes' => array( 'A04p08390' => 'bna', 'A05p17360' => 'bna', 'A05p36190' => 'bna', 'A05p36210' => 'bna', 'A05p36230' => 'bna', 'A05p36240' => 'bna', 'A05p36250' => 'bna', 'A05p36270' => 'bna', 'A06p00070' => 'bna', 'A07p41670' => 'bna', 'A08p36660' => 'bna', 'A09p67700' => 'bna', 'A10p03310' => 'bna', 'Aa31LG10G570' => 'aar', 'Aa31LG1G19880' => 'aar', 'Aa31LG4G6230' => 'aar', 'Aa31LG8G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3465' => 'aag', 'Actinidia03674' => 'ach', 'Actinidia15468' => 'ach', 'Actinidia17023' => 'ach', 'Actinidia33185' => 'ach', 'Actinidia33186' => 'ach', 'Actinidia35864' => 'ach', 'Ah.13g073330' => 'amhyb', 'Ah.13g078140' => 'amhyb', 'AL1G14600' => 'aly', 'AL2G36150' => 'aly', 'AL3G25180' => 'aly', 'AL3G25200' => 'aly', 'Aqoxy1G04297' => 'aox', 'Aqoxy2G02705' => 'aox', 'Aqoxy2G03859' => 'aox', 'Aqoxy5G01079' => 'aox', 'arahy.Tifrunner.gnm1.ann1.03HAKR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1C5WUF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8P4JNJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J9QP8S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K5DIHH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KFLF6K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8R3SK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YM4VCW' => 'arhy', 'AT1G04880' => 'ath', 'AT1G55650' => 'ath', 'AT1G76110' => 'ath', 'AT3G13350' => 'ath', 'ATR0661G320' => 'atr', 'ATR0693G224' => 'atr', 'ATR0751G203' => 'atr', 'ATR1145G108' => 'atr', 'Atru.chr13.200' => 'acertr', 'Atru.chr2.3895' => 'acertr', 'Atru.chr4.1702' => 'acertr', 'AUR62002429' => 'cqu', 'AUR62013853' => 'cqu', 'AUR62018594' => 'cqu', 'AUR62020824' => 'cqu', 'AUR62023759' => 'cqu', 'AUR62036747' => 'cqu', 'AUR62036749' => 'cqu', 'BcaB02g06895' => 'bca', 'BcaB02g10808' => 'bca', 'BcaB03g13467' => 'bca', 'BcaB06g25460' => 'bca', 'BcaB06g25461' => 'bca', 'BcaB06g25462' => 'bca', 'BcaB06g25463' => 'bca', 'BcaB06g25464' => 'bca', 'BcaB06g25465' => 'bca', 'BcaB06g25466' => 'bca', 'BcaB06g25467' => 'bca', 'BcaB06g25468' => 'bca', 'BcaB06g25469' => 'bca', 'BcaB07g33194' => 'bca', 'BcaB08g35798' => 'bca', 'BcaC02g09388' => 'bca', 'BcaC05g24433' => 'bca', 'BcaC05g29186' => 'bca', 'BcaC05g29187' => 'bca', 'BcaC07g36873' => 'bca', 'BcaC07g42156' => 'bca', 'BcaC08g43643' => 'bca', 'BcaC08g44208' => 'bca', 'BcaC08g47104' => 'bca', 'BcaC08g47291' => 'bca', 'BcaNung05157' => 'bca', 'BcaNung05159' => 'bca', 'BcaNung05160' => 'bca', 'BcaNung05161' => 'bca', 'BolC4t25792H' => 'bol', 'BolC5t29085H' => 'bol', 'BolC5t34121H' => 'bol', 'BolC5t34123H' => 'bol', 'BolC6t36142H' => 'bol', 'BolC6t36814H' => 'bol', 'BolC6t40044H' => 'bol', 'BolC8t46960H' => 'bol', 'BolC8t52735H' => 'bol', 'BraA04t16526Z' => 'bra', 'BraA05t20632Z' => 'bra', 'BraA05t22423Z' => 'bra', 'BraA05t22425Z' => 'bra', 'BraA05t22428Z' => 'bra', 'BraA06t23222Z' => 'bra', 'BraA07t31696Z' => 'bra', 'BraA08t35569Z' => 'bra', 'BraA09t42100Z' => 'bra', 'BraA10t42607Z' => 'bra', 'C04p42090' => 'bna', 'C05p03030' => 'bna', 'C05p54550' => 'bna', 'C05p54570' => 'bna', 'C06p10620' => 'bna', 'C06p16170' => 'bna', 'C06p50050' => 'bna', 'C08p01550' => 'bna', 'C08p52030' => 'bna', 'CAN.G1635.7' => 'can', 'CAN.G268.3' => 'can', 'CAN.G401.12' => 'can', 'CAN.G401.4' => 'can', 'CAN.G401.6' => 'can', 'CAN.G8.47' => 'can', 'CANSAT11G1516' => 'cansat', 'CANSAT25G2358' => 'cansat', 'CANSAT78G1324' => 'cansat', 'CARHR004270' => 'chi', 'CARHR069650' => 'chi', 'CARHR087960' => 'chi', 'Carub.0001s0412' => 'cru', 'Carub.0001s3629' => 'cru', 'Carub.0001s4417' => 'cru', 'Carub.0002s0846' => 'cru', 'Carub.0002s0851' => 'cru', 'Carub.0002s0854' => 'cru', 'Carub.0002s2299' => 'cru', 'Carub.0003s1273' => 'cru', 'Carub.0004s1422' => 'cru', 'Carub.0007s3214' => 'cru', 'Ca_11377_v3' => 'car', 'Ca_14139_v3' => 'car', 'Ca_15451_v3' => 'car', 'CBR_g48690' => 'cbr', 'Cc03_g07860' => 'ccan', 'Cc05_g15700' => 'ccan', 'Cc10_g01010' => 'ccan', 'CDE02G0773' => 'cde', 'CDE02G4389' => 'cde', 'CDE03G0487' => 'cde', 'CDE04G1419' => 'cde', 'CDE06G2760' => 'cde', 'CDE06G2769' => 'cde', 'Cfa014019' => 'cfa', 'Cfa014913' => 'cfa', 'Cfa016960' => 'cfa', 'Ciclev10001816m.g' => 'ccl', 'Ciclev10005091m.g' => 'ccl', 'Ciclev10008919m.g' => 'ccl', 'CiPaw.01G121000' => 'cil', 'CiPaw.02G066300' => 'cil', 'CiPaw.07G142500' => 'cil', 'CiPaw.09G129700' => 'cil', 'CiPaw.11G210600' => 'cil', 'CiPaw.12G142500' => 'cil', 'ClCG05G015360' => 'cla', 'ClCG06G007770' => 'cla', 'COL.COLO4_07788' => 'col', 'COL.COLO4_09888' => 'col', 'COL.COLO4_26067' => 'col', 'Cpa.g.sc1068.1' => 'cpa', 'Cpa.g.sc12.68' => 'cpa', 'Cpa.g.sc26.248' => 'cpa', 'Cre13.g571050' => 'cre', 'CsaV3_2G011520' => 'csa', 'CsaV3_4G037000' => 'csa', 'CSS0037068' => 'camsi', 'CSS0039401' => 'camsi', 'CSS0043696' => 'camsi', 'CSS0046638' => 'camsi', 'CSS0047336' => 'camsi', 'CSS0050103' => 'camsi', 'DCAR_013758' => 'dca', 'DCAR_017610' => 'dca', 'DCAR_024473' => 'dca', 'DCAR_026613' => 'dca', 'Dinv03680' => 'din', 'Dinv12686' => 'din', 'Dinv19195' => 'din', 'Dinv19644' => 'din', 'Dinv27237' => 'din', 'Dinv31906' => 'din', 'Dinv38233' => 'din', 'Dinv39562' => 'din', 'Dinv40915' => 'din', 'Duzib041G0438' => 'dzi', 'Duzib093G0420' => 'dzi', 'Duzib116G0121' => 'dzi', 'Duzib212G0740' => 'dzi', 'Duzib213G0274' => 'dzi', 'Duzib268G0395' => 'dzi', 'Duzib268G0907' => 'dzi', 'ECA232G0527' => 'eca', 'ECA238G1605' => 'eca', 'ECA240G2895' => 'eca', 'ECA248G3338' => 'eca', 'EL10Ac1g02053' => 'bvu', 'EL10Ac3g06122' => 'bvu', 'EL10Ac3g07478' => 'bvu', 'Eucgr.F01991' => 'egr', 'Eucgr.F03526' => 'egr', 'Eucgr.H00052' => 'egr', 'FAN07G2115' => 'fan', 'FAN11G1862' => 'fan', 'FAN12G3417' => 'fan', 'FAN15G0503' => 'fan', 'FAN16G2494' => 'fan', 'FAN17G1455' => 'fan', 'FAN20G1477' => 'fan', 'FAN21G2040' => 'fan', 'FAN22G0086' => 'fan', 'FAN25G3495' => 'fan', 'FAN27G0685' => 'fan', 'FvH4_3g41610' => 'fve', 'FvH4_4g16370' => 'fve', 'Glyma.04G020000' => 'gma', 'Glyma.04G113000' => 'gma', 'Glyma.06G321700' => 'gma', 'Glyma.10G294000' => 'gma', 'Glyma.10G294100' => 'gma', 'Glyma.20G243900' => 'gma', 'Gohir.A03G094500' => 'ghi', 'Gohir.A05G182100' => 'ghi', 'Gohir.A10G124901' => 'ghi', 'Gohir.A13G128500' => 'ghi', 'Gohir.D02G123900' => 'ghi', 'Gohir.D05G185100' => 'ghi', 'Gohir.D10G141600' => 'ghi', 'Gohir.D13G131900' => 'ghi', 'Gorai.002G194700' => 'gra', 'Gorai.005G130200' => 'gra', 'Gorai.009G190400' => 'gra', 'Gorai.011G157600' => 'gra', 'Gorai.013G147900' => 'gra', 'GSVIVG01008723001' => 'vvi', 'GSVIVG01014843001' => 'vvi', 'GSVIVG01021061001' => 'vvi', 'HanXRQChr03g0077881' => 'han', 'HanXRQChr04g0114861' => 'han', 'HanXRQChr14g0435981' => 'han', 'Haze_09915' => 'cav', 'Haze_11610' => 'cav', 'Haze_22726' => 'cav', 'Hma1.2p1_0383F.1_g140250' => 'hma', 'Hma1.2p1_0383F.1_g140260' => 'hma', 'Hma1.2p1_1407F.1_g281450' => 'hma', 'HPP92_003491' => 'vpl', 'HPP92_008114' => 'vpl', 'HPP92_009907' => 'vpl', 'HPP92_020464' => 'vpl', 'HPP92_026168' => 'vpl', 'HPP92_026889' => 'vpl', 'Hund05144' => 'sun', 'Hund22972' => 'sun', 'Lalb_Chr02g0144151' => 'lal', 'Lalb_Chr08g0246331' => 'lal', 'Lalb_Chr11g0061761' => 'lal', 'Lalb_Chr11g0061771' => 'lal', 'Lalb_Chr11g0072731' => 'lal', 'Lalb_Chr18g0048641' => 'lal', 'Lalb_Chr21g0307471' => 'lal', 'Lj1g0016144' => 'lja', 'Lj1g0016814' => 'lja', 'Lj1g0017531' => 'lja', 'Lj3g0005977' => 'lja', 'Lj4A16T126' => 'lonja', 'Lj5g0016874' => 'lja', 'Lj6A553G29' => 'lonja', 'Lj8A183T36' => 'lonja', 'Lsat_1_v5_gn_1_71820' => 'lsa', 'Lsat_1_v5_gn_2_44980' => 'lsa', 'Lsat_1_v5_gn_9_46720' => 'lsa', 'Lsat_1_v5_gn_9_88540' => 'lsa', 'Manes.03G147600' => 'mes', 'Manes.05G204800' => 'mes', 'Manes.15G053800' => 'mes', 'Manes.18G008500' => 'mes', 'Mapoly0043s0128' => 'mpo', 'MBI01_g25650_MAGBIO' => 'mbi', 'MBI03_g39993_MAGBIO' => 'mbi', 'MBI05_g05627_MAGBIO' => 'mbi', 'MBI05_g05629_MAGBIO' => 'mbi', 'MBI05_g24485_MAGBIO' => 'mbi', 'MBI08_g40331_MAGBIO' => 'mbi', 'MBI08_g42718_MAGBIO' => 'mbi', 'MBI09_g14588_MAGBIO' => 'mbi', 'MBI10_g22588_MAGBIO' => 'mbi', 'MBI12_g45469_MAGBIO' => 'mbi', 'MBI14_g29305_MAGBIO' => 'mbi', 'MBI14_g47062_MAGBIO' => 'mbi', 'MBI15_g44393_MAGBIO' => 'mbi', 'MBI16_g37640_MAGBIO' => 'mbi', 'MBI18_g09847_MAGBIO' => 'mbi', 'MBI19_g14784_MAGBIO' => 'mbi', 'MD03G1042900' => 'mdo', 'MD04G1008800' => 'mdo', 'MD08G1006400' => 'mdo', 'MD11G1045900' => 'mdo', 'MD13G1138800' => 'mdo', 'MD15G1005800' => 'mdo', 'Medtr1g116180' => 'mtr', 'Medtr3g009890' => 'mtr', 'Medtr3g114920' => 'mtr', 'Medtr7g005970' => 'mtr', 'MELO3C016999.2' => 'cme', 'MELO3C020449.2' => 'cme', 'MELO3C028458.2' => 'cme', 'Migut.C00909' => 'egut', 'Migut.G00695' => 'egut', 'Migut.H01714' => 'egut', 'MSTRG.13044' => 'ama', 'MSTRG.14524' => 'ama', 'Nitab4.5_0000498g0170' => 'nta', 'Nitab4.5_0000898g0060' => 'nta', 'Nitab4.5_0000898g0160' => 'nta', 'Nitab4.5_0002216g0010' => 'nta', 'Nitab4.5_0002353g0020' => 'nta', 'Nitab4.5_0003570g0010' => 'nta', 'Nitab4.5_0019106g0010' => 'nta', 'Nn1g07633' => 'nnu', 'Nn1g07879' => 'nnu', 'Nn3g17439' => 'nnu', 'Nn3g20036' => 'nnu', 'Nn5g30235' => 'nnu', 'Nn5g30869' => 'nnu', 'Nn6g31871' => 'nnu', 'Nn6g34418' => 'nnu', 'Oeu006262.2' => 'oeu', 'Oeu013804.1' => 'oeu', 'Oeu019804.1' => 'oeu', 'Oeu019807.1' => 'oeu', 'Oeu019814.1' => 'oeu', 'Oeu019815.1' => 'oeu', 'Oeu022371.1' => 'oeu', 'Oeu034575.1' => 'oeu', 'Oeu034576.1' => 'oeu', 'Oeu041363.1' => 'oeu', 'Oeu055360.1' => 'oeu', 'Oeu064068.1' => 'oeu', 'Os02g0469900' => 'osa', 'Peaxi162Scf00047g00519' => 'pax', 'Peaxi162Scf00064g00829' => 'pax', 'Peaxi162Scf15341g00003' => 'pax', 'PGR031G2500' => 'pgr', 'PGR083G2486' => 'pgr', 'PGR142G3678' => 'pgr', 'PGSC0003DMG400029327' => 'stu', 'PGSC0003DMG400031288' => 'stu', 'PGSC0003DMG401018896' => 'stu', 'PGSC0003DMG402018896' => 'stu', 'Phvul.005G004300' => 'pvu', 'Phvul.007G006000' => 'pvu', 'Phvul.007G006100' => 'pvu', 'Phvul.009G020700' => 'pvu', 'Potri.001G315200' => 'ptr', 'Potri.005G246700' => 'ptr', 'Potri.011G168800' => 'ptr', 'Potri.017G055200' => 'ptr', 'Pp3c1_33100' => 'ppa', 'Pp3c7_23660' => 'ppa', 'Prupe.1G008100' => 'ppe', 'Prupe.1G358300' => 'ppe', 'Prupe.6G035300' => 'ppe', 'Psat0s2083g0160' => 'psa', 'Psat0s2083g0240' => 'psa', 'Psat0s2228g0080' => 'psa', 'Psat3g107360' => 'psa', 'Psat5g011640' => 'psa', 'Psat5g231880' => 'psa', 'Psat6g240880' => 'psa', 'Psat6g240920' => 'psa', 'Psat7g039280' => 'psa', 'Psat7g043960' => 'psa', 'Psat7g192760' => 'psa', 'Psat7g192800' => 'psa', 'PSO017G7019' => 'pso', 'PSO063G2803' => 'pso', 'PSO063G5485' => 'pso', 'PSO170G1184' => 'pso', 'PSO210G5207' => 'pso', 'PSO782G5301' => 'pso', 'QL02p013344' => 'qlo', 'QL06p024828' => 'qlo', 'QL08p000529' => 'qlo', 'QL09p053965' => 'qlo', 'RcHm_v2.0_Chr4g0415261' => 'rch', 'RcHm_v2.0_Chr5g0074651' => 'rch', 'RcHm_v2.0_Chr6g0303791' => 'rch', 'Rhsim01G0255400' => 'rsi', 'Rhsim04G0007700' => 'rsi', 'Rhsim06G0010600' => 'rsi', 'Rhsim09G0056200' => 'rsi', 'Sabra05G0190700' => 'sbr', 'Sabra11G0137900' => 'sbr', 'Sabra16G0199400' => 'sbr', 'Sabra17G0046800' => 'sbr', 'Sabra17G0049000' => 'sbr', 'SalBow7G1352' => 'sbo', 'SalBow8G0560' => 'sbo', 'SalBow8G3132' => 'sbo', 'Sc03g0011770' => 'sci', 'Sc13g0000190' => 'sci', 'Sc26g0004500' => 'sci', 'Sed0002207' => 'sed', 'Sed0018827' => 'sed', 'Sed0026703' => 'sed', 'SEGI_03044' => 'sgi', 'SEGI_07905' => 'sgi', 'SEGI_08051' => 'sgi', 'SEGI_16568' => 'sgi', 'SEGI_20255' => 'sgi', 'SEGI_21670' => 'sgi', 'SEGI_22736' => 'sgi', 'SEGI_24820' => 'sgi', 'SEGI_28457' => 'sgi', 'SEGI_29019' => 'sgi', 'SEGI_34433' => 'sgi', 'SEGI_36133' => 'sgi', 'SEGI_37314' => 'sgi', 'SEGI_37984' => 'sgi', 'SEGI_38962' => 'sgi', 'SGA_v2.0_scaffold11G05960' => 'sas', 'SGA_v2.0_scaffold145G36109' => 'sas', 'SGA_v2.0_scaffold57G20102' => 'sas', 'SGA_v2.0_scaffold92G28174' => 'sas', 'SHI01078' => 'shi', 'SHI01084' => 'shi', 'SHI21549' => 'shi', 'SHI21553' => 'shi', 'SMO367G0512' => 'smo', 'SMO367G0741' => 'smo', 'Solyc01g011277.1' => 'sly', 'Solyc09g091960.3' => 'sly', 'Solyc12g016190.2' => 'sly', 'Solyc12g094440.2' => 'sly', 'Sopen09g034860' => 'spe', 'Sopen12g007980' => 'spe', 'Sopen12g031330' => 'spe', 'Sp1g03720' => 'spa', 'Sp1g41270' => 'spa', 'Sp3g11550' => 'spa', 'Sp4g15180' => 'spa', 'Sp5g31230' => 'spa', 'SpUn0748_0010' => 'spa', 'TAR362G1147' => 'tar', 'TAR362G1235' => 'tar', 'TAR365G1158' => 'tar', 'TAR627G0328' => 'tar', 'TAR628G0748' => 'tar', 'THA.LOC104801030' => 'tha', 'THA.LOC104810304' => 'tha', 'THA.LOC104811448' => 'tha', 'THA.LOC104822702' => 'tha', 'THA.LOC104827380' => 'tha', 'Thecc.04G201600' => 'tca', 'Thecc.04G201800' => 'tca', 'Thecc.04G203600' => 'tca', 'Thecc.07G001600' => 'tca', 'Thecc.08G053400' => 'tca', 'Thhalv10007631m.g' => 'esa', 'Thhalv10011675m.g' => 'esa', 'Thhalv10017702m.g' => 'esa', 'Thhalv10017860m.g' => 'esa', 'Thhalv10018826m.g' => 'esa', 'Thhalv10021143m.g' => 'esa', 'TPR.G10416' => 'tpr', 'TPR.G15603' => 'tpr', 'TPR.G16692' => 'tpr', 'TPR.G38136' => 'tpr', 'TWI09G0965' => 'twi', 'TWI09G1575' => 'twi', 'TWI38G2024' => 'twi', 'TWI39G1003' => 'twi', 'TWI56G0846' => 'twi', 'TWI73G1259' => 'twi', 'unitig_21.g20260' => 'ugi', 'unitig_46.g18041' => 'ugi', 'unitig_744.g24498' => 'ugi', 'unitig_747.g21678' => 'ugi', 'vmacro00473' => 'vma', 'vmacro09799' => 'vma', 'vmacro21843' => 'vma', 'VMungo0720G0565' => 'vmu', 'VMungo1080G0142' => 'vmu', 'VMungo1309G2014' => 'vmu', 'Zm00001eb203110' => 'zma', 'Zm00001eb240740' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001261' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001261' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001261' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001261' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151