Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0017233 Clp ATPase [Theobroma cacao] Chr1 + View
CSS0009915 unnamed protein product [Coffea canephora] Chr15 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G17380 LG-4 - View
Acer truncatum Atru.chr6.1902 chr6 - View
Arabidopsis lyrata AL5G28380 scaffold_5 - View
Arabidopsis lyrata AL8G25110 scaffold_8 - View
Avicennia marina MSTRG.4638 ScioBoG_102837_HRSCAF_103074 - View
Avicennia marina MSTRG.22854 ScioBoG_3703_HRSCAF_3719 + View
Amaranthus hybridus Ah.02g114650 AmaHy_arrow1_Scaffold_2 + View
Amaranthus hybridus Ah.11g046770 ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic AmaHy_arrow1_Scaffold_11 - View
Aquilegia oxysepala Aqoxy5G03174 CHR05 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.ZC3RNY K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) arahy.Tifrunner.gnm1.Arahy.03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.EZF9NP K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) arahy.Tifrunner.gnm1.Arahy.13 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.PT1JHX K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) arahy.Tifrunner.gnm1.Arahy.08 + View
Arabidopsis thaliana AT5G50920 CLPC homologue 1 Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. Association of Hsp93 with the inner envelope membrane through its N domain is important for the functions of Hsp93 in vivo. CLPC homologue 1 (CLPC1)%3B FUNCTIONS IN: ATP-dependent peptidase activity%2C ATPase activity%2C ATP binding%3B INVOLVED IN: protein import into chloroplast stroma%2C regulation of chlorophyll biosynthetic process%2C protein targeting to chloroplast%2C chloroplast organization%3B LOCATED IN: in 8 components%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Clp ATPase%2C C-terminal (InterPro:IPR019489)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-2 (InterPro:IPR013093)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C Chaperonin clpA/B (InterPro:IPR001270)%2C Chaperonin ClpA/B%2C conserved site (InterPro:IPR018368)%2C UvrB/UvrC protein (InterPro:IPR001943)%2C Clp%2C N-terminal (InterPro:IPR004176)%3B BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr5 - View
Arabidopsis thaliana AT3G48870 Clp ATPase Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma. May function redundantly with TIC complex in chloroplast protein import. HSP93-III%3B FUNCTIONS IN: in 6 functions%3B INVOLVED IN: protein import into chloroplast stroma%2C chloroplast organization%3B LOCATED IN: in 7 components%3B EXPRESSED IN: guard cell%2C leaf%3B EXPRESSED DURING: seed development stages%3B CONTAINS InterPro DOMAIN/s: Clp ATPase%2C C-terminal (InterPro:IPR019489)%2C ATPase%2C AAA-type%2C core (InterPro:IPR003959)%2C ATPase%2C AAA-2 (InterPro:IPR013093)%2C ATPase%2C AAA+ type%2C core (InterPro:IPR003593)%2C Chaperonin clpA/B (InterPro:IPR001270)%2C Chaperonin ClpA/B%2C conserved site (InterPro:IPR018368)%2C UvrB/UvrC protein (InterPro:IPR001943)%2C Clp%2C N-terminal (InterPro:IPR004176)%3B BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1)%3B Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12%3B Bacteria - 1396%3B Metazoa - 17338%3B Fungi - 3422%3B Plants - 5037%3B Viruses - 0%3B Other Eukaryotes - 2996 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC07g39362 ChrC07 - View
Brassica carinata BcaC01g06068 ChrC01 + View
Brassica carinata BcaC09g49911 ChrC09 - View
Brassica carinata BcaB01g00774 ChrB01 + View
Brassica napus A01p25180 A01 + View
Brassica napus A03p16380 A03 - View
Brassica napus C01p31380 C01 + View
Brassica oleracea BolC3t14312H C3 - View
Brassica oleracea BolC1t03075H C1 + View
Brassica rapa BraA01t02426Z A01 + View
Beta vulgaris EL10Ac5g11304 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Chr5_EL10_PGA_scaffold2 + View
Capsicum annuum CAN.G843.23 PGAv.1.6.scaffold843 - View
Cannabis sativa CANSAT56G1478 NC_044371.1 - View
Cicer arietinum L. Ca_17585_v3 Ca_LG6_v3 - View
Corylus avellana Haze_07112 Similar to Chaperone protein ClpC, chloroplastic (Pisum sativum OX%3D3888) 4 + View
Coffea canephora Cc04_g05910 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic chr4 + View
Citrus clementina Ciclev10017868m.g scaffold_2 + View
Citrus clementina Ciclev10030863m.g scaffold_4 - View
Ceratophyllum demersum CDE02G0465 1 + View
Carpinus fangiana Cfa018719 Cfa08 + View
Cardamine hirsuta CARHR257340 Chaperone protein ClpB 1 Chr8 + View
Cardamine hirsuta CARHR157680 Chaperone protein ClpB 1 Chr5 - View
Carya illinoinensis CiPaw.11G001300 PTHR11638//PTHR11638:SF119 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Chr11 + View
Citrullus lanatus ClCG06G018330 [pt] ATP-dependent Clp protease ATP-binding subunit ClpB CG_Chr06 - View
Cucumis melo MELO3C026162.2 ATP-dependent clp protease chr02 - View
Chenopodium quinoa AUR62034768 CD4B: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic C_Quinoa_Scaffold_3586 + View
Chenopodium quinoa AUR62009519 clpB1: Chaperone protein ClpB 1 C_Quinoa_Scaffold_2493 - View
Capsella rubella Carub.0005s1504 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) scaffold_5 - View
Cucumis sativus L. CsaV3_1G000100 ATP-dependent Clp protease ATP-binding subunit chr1 + View
Daucus carota DCAR_025657 hypothetical protein DCARv2_Chr7 + View
Davidia involucrata Dinv23211 GWHABJS00000019 - View
Davidia involucrata Dinv13735 GWHABJS00000006 - View
Durio zibethinus Duzib084G0746 NW_019167827.1 - View
Durio zibethinus Duzib068G0301 NW_019167838.1 - View
Durio zibethinus Duzib205G0028 NW_019168381.1 - View
Erigeron canadensis ECA232G2662 Conyza_canadensis_scaffold:2 + View
Eucalyptus grandis Eucgr.K02198 Chr11 + View
Erythranthe guttata Migut.I00611 scaffold_9 - View
Eutrema salsugineum Thhalv10010143m.g PF00004//PF02151//PF07728//PF10431 - ATPase family associated with various cellular activities (AAA) (AAA) // UvrB/uvrC motif (UVR) // AAA domain (dynein-related subfamily) (AAA_5) // C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) scaffold_16 + View
Fragaria x ananassa FAN13G2516 PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Fvb5-2 - View
Fragaria x ananassa FAN18G4242 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Fvb5-1 - View
Fragaria x ananassa FAN04G3089 PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Fvb5-4 - View
Fragaria x ananassa FAN08G0605 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Fvb5-3 + View
Fragaria vesca FvH4_6g04512 Fvb6 - View
Fragaria vesca FvH4_5g09290 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Fvb5 - View
Gossypium hirsutum Gohir.A03G056700 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) A03 + View
Gossypium hirsutum Gohir.D09G249300 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) D09 + View
Gossypium hirsutum Gohir.A09G248300 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) A09 + View
Gossypium hirsutum Gohir.D03G109800 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) D03 - View
Gossypium hirsutum Gohir.A12G193350 PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC A12 - View
Glycine max Glyma.08G008400 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Gm08 + View
Glycine max Glyma.04G200400 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Gm04 - View
Glycine max Glyma.05G201100 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Gm05 + View
Gossypium raimondii Gorai.003G116200 Chr03 - View
Gossypium raimondii Gorai.006G273600 Chr06 + View
Helianthus annuus HanXRQChr16g0498881 Putative clpA/B family; UVR domain; P-loop containing nucleoside triphosphate hydrolase; ClpA/B, conserved site 2 HanXRQChr16 - View
Helianthus annuus HanXRQChr09g0273921 Probable ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4A, chloroplastic HanXRQChr09 + View
Lupinus albus Lalb_Chr11g0069261 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Lalb_Chr11 + View
Lupinus albus Lalb_Chr13g0297011 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Lalb_Chr13 + View
Lupinus albus Lalb_Chr12g0202421 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Lalb_Chr12 - View
Lupinus albus Lalb_Chr07g0183761 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Lalb_Chr07 - View
Lotus japonicus Lj4g0023906 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) chr4 - View
Lotus japonicus Lj1g0019828 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) chr1 - View
Lonicera japonica Lj9C485G16 GWHAAZE00000009 - View
Lonicera japonica Lj5C88T5 GWHAAZE00000005 + View
Lactuca sativa Lsat_1_v5_gn_4_84680 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Lsat_1_v8_lg_4 - View
Magnolia biondii MBI11_g11870_MAGBIO AED:0.35 Chr11 - View
Malus domestica MD14G1148700 CLPC homologue 1 Chr14 + View
Malus domestica MD06G1132300 CLPC homologue 1 Chr06 + View
Manihot esculenta Manes.06G125800 Chromosome06 - View
Manihot esculenta Manes.14G045700 Chromosome14 + View
Manihot esculenta Manes.11G077400 Chromosome11 + View
Medicago truncatula Medtr8g100040 ATP-dependent Clp protease ATP-binding subunit chr8 + View
Nelumbo nucifera Nn3g16302 chr3 + View
Nelumbo nucifera Nn4g22167 chr4 + View
Nicotiana tabacum Nitab4.5_0000663g0180 P-loop containing nucleoside triphosphate hydrolase, Clp ATPase, C-terminal, ClpA/B, conserved site 2, AAA+ ATPase domain, Clp, N-terminal, UVR domain, Double Clp-N motif, ATPase, AAA-type, core, ATPase, AAA-2, ClpA/B, conserved site 1, ClpA/B family Nitab4.5_0000663 + View
Petunia axillaris Peaxi162Scf00314g00528 ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic Peaxi162Scf00314 + View
Prunus persica Prupe.5G143300 Pp05 + View
Pisum sativum Psat7g039080 AAA domain (Cdc48 subfamily) chr7LG7 - View
Pisum sativum Psat5g054560 AAA domain (Cdc48 subfamily) chr5LG3 - View
Papaver somniferum PSO017G4374 NC_039362.1 + View
Papaver somniferum PSO478G5088 NC_039361.1 + View
Papaver somniferum PSO017G2230 NC_039362.1 - View
Populus trichocarpa Potri.015G105100 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Chr15 - View
Populus trichocarpa Potri.012G105900 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Chr12 - View
Phaseolus vulgaris Phvul.002G282500 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Chr02 + View
Quercus lobata QL10p000886 10 + View
Quercus lobata QL02p069859 CM012294 + View
Rosa chinensis RcHm_v2.0_Chr7g0188931 RcHm_v2.0_Chr7 + View
Rhododendron simsii Rhsim12G0180500 chr12 - View
Rhododendron simsii Rhsim08G0196000 chr08 - View
Striga asiatica SGA_v2.0_scaffold5G02817 scaffold5 + View
Striga asiatica SGA_v2.0_scaffold40G15621 scaffold40 - View
Salvia bowleyana SalBow7G0009 GWHASIU00000005 + View
Salvia bowleyana SalBow4G0789 GWHASIU00000008 - View
Salvia bowleyana SalBow1G7968 GWHASIU00000001 - View
Salix brachista Sabra12G0078200 GWHAAZH00000012 - View
Salix brachista Sabra15G0125300 GWHAAZH00000015 - View
Simmondsia chinensis Sc04g0000250 GWHAASQ00000004 + View
Simmondsia chinensis Sc22g0003500 GWHAASQ00000022 + View
Schrenkiella parvula Sp5g13180 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) ch5-1 + View
Schrenkiella parvula Sp6g13090 K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) ch6-6 - View
Solanum pennellii Sopen03g037240 ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea), Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. | CLPC homologue 1 (CLPC1) | FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding | INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization | LOCATED IN: in 8 components | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal , ATPase, AAA-type, core , ATPase, AAA-2 , ATPase, AAA+ type, core , Chaperonin clpA/B , Chaperonin ClpA/B, conserved site , UvrB/UvrC protein , Clp, N-terminal | BEST Arabidopsis thaliana protein match is: Clp ATPase Spenn-ch03 - View
Solanum tuberosum PGSC0003DMG400014248 ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic ST4.03ch03 - View
Selenicereus undatus Hund10055 Scaffold_10417 + View
Selenicereus undatus Hund02498 Scaffold_33678 - View
Trochodendron aralioides TAR371G0742 group13 - View
Trochodendron aralioides TAR622G0976 group8 - View
Trochodendron aralioides TAR629G2448 group0 + View
Theobroma cacao Thecc.03G138700 CLPC Chromosome_3 - View
Theobroma cacao Thecc.04G046500 Chromosome_4 - View
Tarenaya hassleriana THA.LOC104821539 chaperone protein ClpC1%2C chloroplastic NW_010966459.1 - View
Tarenaya hassleriana THA.LOC104798922 chaperone protein ClpC1%2C chloroplastic-like NW_010968505.1 - View
Trifolium pratense TPR.G21580 Tp57577_TGAC_v2_LG3 + View
Trifolium pratense TPR.G12887 Tp57577_TGAC_v2_LG3 + View
Tripterygium wilfordii TWI23G0413 NC_052239.1 + View
Tripterygium wilfordii TWI39G0664 NC_052250.1 - View
Vaccinium macrocarpon vmacro19168 Similar to CD4B: ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic (Solanum lycopersicum OX%3D4081) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro16750 Similar to Chaperone protein ClpC, chloroplastic (Pisum sativum OX%3D3888) chr4_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo0251G1305 CM024069.1 + View
Vitis vinifera GSVIVG01008636001 chr17 + View
Vitis vinifera GSVIVG01033000001 chr14 + View