Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0021900 unnamed protein product [Coffea canephora] Chr14 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG2G1060 LG-2 - View
Acer truncatum Atru.chr9.2118 chr9 + View
Actinidia chinensis Actinidia10607 Lachesis_group6 + View
Actinidia chinensis Actinidia28347 Lachesis_group23 + View
Arabidopsis lyrata AL2G11140 scaffold_2 + View
Avicennia marina MSTRG.11956 ScioBoG_17730_HRSCAF_17811 + View
Avicennia marina MSTRG.13860 ScioBoG_18778_HRSCAF_18863 - View
Amaranthus hybridus Ah.07g196720 AmaHy_arrow1_Scaffold_7 - View
Amaranthus hybridus Ah.12g051910 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic (MECDP-synthase) (MECPS) (MECS) (EC 4.6.1.12) AmaHy_arrow1_Scaffold_12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.RG9U10 K01770 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispF) arahy.Tifrunner.gnm1.Arahy.15 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.072U0I 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase arahy.Tifrunner.gnm1.Arahy.05 + View
Arabidopsis thaliana AT1G63970 isoprenoid F Encodes a protein with 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspF isoprenoid F (ISPF)%3B FUNCTIONS IN: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase activity%3B INVOLVED IN: chlorophyll biosynthetic process%2C carotenoid biosynthetic process%2C response to light stimulus%2C isopentenyl diphosphate biosynthetic process%2C mevalonate-independent pathway%3B LOCATED IN: chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C conserved site (InterPro:IPR020555)%2C 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C core (InterPro:IPR003526)%3B Has 6473 Blast hits to 6472 proteins in 2098 species: Archae - 0%3B Bacteria - 4326%3B Metazoa - 0%3B Fungi - 4%3B Plants - 64%3B Viruses - 0%3B Other Eukaryotes - 2079 (source: NCBI BLink). Chr1 - View
Brassica carinata BcaB07g31533 ChrB07 + View
Brassica carinata BcaC04g22662 ChrC04 + View
Brassica carinata BcaC04g22518 ChrC04 - View
Brassica carinata BcaB07g31421 ChrB07 - View
Brassica carinata BcaC02g10359 ChrC02 + View
Brassica napus C04p29780 C04 - View
Brassica napus C09p18370 C09 + View
Brassica napus C09p16940 C09 - View
Brassica napus A09p15170 A09 + View
Brassica napus A09p14050 A09 - View
Brassica oleracea BolC9t54730H C9 + View
Brassica oleracea BolC9t54591H C9 - View
Brassica oleracea BolC4t24512H C4 - View
Brassica rapa BraA09t37052Z A09 - View
Brassica rapa BraA09t37159Z A09 + View
Beta vulgaris EL10Ac5g12833 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Chr5_EL10_PGA_scaffold2 - View
Capsicum annuum CAN.G532.37 PGAv.1.6.scaffold532 - View
Cannabis sativa CANSAT21G0568 NC_044374.1 - View
Corylus avellana Haze_08760 Similar to ISPF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic (Catharanthus roseus OX%3D4058) 4 + View
Coffea canephora Cc08_g15230 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic chr8 - View
Citrus clementina Ciclev10021991m.g scaffold_3 + View
Carpinus fangiana Cfa012239 Cfa05 - View
Cardamine hirsuta CARHR047010 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Chr2 + View
Carya illinoinensis CiPaw.11G130000 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Chr11 + View
Carya illinoinensis CiPaw.12G089400 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Chr12 + View
Citrullus lanatus ClCG07G007880 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CG_Chr07 + View
Cucumis melo MELO3C016339.2 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase chr07 + View
Corchorus olitorius COL.COLO4_08364 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase AWUE01013723.1 + View
Chenopodium quinoa AUR62019751 ISPF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic C_Quinoa_Scaffold_1480 - View
Chenopodium quinoa AUR62010748 ISPF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic C_Quinoa_Scaffold_1280 - View
Capsella rubella Carub.0002s0087 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase scaffold_2 + View
Cucumis sativus L. CsaV3_4G006100 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase chr4 - View
Davidia involucrata Dinv37598 GWHABJS00000017 + View
Durio zibethinus Duzib205G0943 NW_019168381.1 - View
Durio zibethinus Duzib068G0196 NW_019167838.1 - View
Eucalyptus grandis Eucgr.E00780 Chr05 - View
Erythranthe guttata Migut.A00721 scaffold_1 + View
Fragaria x ananassa FAN13G1103 K01770 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispF) Fvb5-2 - View
Fragaria x ananassa FAN08G3453 K01770 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispF) Fvb5-3 + View
Fragaria x ananassa FAN04G1400 K01770 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispF) Fvb5-4 - View
Fragaria vesca FvH4_5g03170 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Fvb5 - View
Gossypium hirsutum Gohir.D08G134600 K01770 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispF) D08 + View
Gossypium hirsutum Gohir.D03G078300 K01770 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispF) D03 - View
Gossypium hirsutum Gohir.A02G105500 K01770 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (ispF) A02 + View
Gossypium hirsutum Gohir.A08G114400 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase A08 + View
Glycine max Glyma.11G021400 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Gm11 + View
Gossypium raimondii Gorai.003G085800 Chr03 + View
Gossypium raimondii Gorai.004G137800 Chr04 + View
Hydrangea macrophylla Hma1.2p1_0377F.1_g139550 Hma1.2p1_0377F.1 - View
Lupinus albus Lalb_Chr09g0320831 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Lalb_Chr09 + View
Lotus japonicus LjContig00312_ERROPOS870357g0014232 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Contig00312_ERROPOS870357 + View
Lonicera japonica Lj2A178G47 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_6_84980 Lsat_1_v8_lg_6 + View
Malus domestica MD06G1090700 isoprenoid F Chr06 - View
Malus domestica MD14G1111600 isoprenoid F Chr14 - View
Manihot esculenta Manes.02G017610 Chromosome02 - View
Nelumbo nucifera Nn1g01669 chr1 - View
Nicotiana tabacum Nitab4.5_0003015g0100 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site Nitab4.5_0003015 - View
Olea europaea Oeu042360.2 chr13 + View
Petunia axillaris Peaxi162Scf00074g01724 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Peaxi162Scf00074 + View
Punica granatum PGR031G3114 NC_045127.1 - View
Prunus persica Prupe.5G106300 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Pp05 - View
Papaver somniferum PSO782G4831 NC_039365.1 + View
Papaver somniferum PSO478G4030 NC_039361.1 - View
Populus trichocarpa Potri.003G132400 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Chr03 - View
Populus trichocarpa Potri.001G099300 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Chr01 + View
Phaseolus vulgaris Phvul.002G159900 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Chr02 - View
Quercus lobata QL12p031809 12 + View
Rosa chinensis RcHm_v2.0_Chr7g0196611 RcHm_v2.0_Chr7 + View
Rhododendron simsii Rhsim02G0235500 chr02 - View
Striga asiatica SGA_v2.0_scaffold144G35903 scaffold144 + View
Striga asiatica SGA_v2.0_scaffold111G31472 scaffold111 + View
Salvia bowleyana SalBow8G4511 GWHASIU00000004 + View
Salix brachista Sabra01G0074500 GWHAAZH00000001 + View
Salix brachista Sabra03G0094900 GWHAAZH00000003 - View
Simmondsia chinensis Sc01g0009830 GWHAASQ00000001 - View
Sechium edule Sed0013368 LG13 + View
Sechium edule Sed0007168 LG07 + View
Solanum lycopersicum Solyc08g081570.3 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (AHRD V3.3 *** A0A2G3DAU7_CAPCH) SL4.0ch08 - View
Schrenkiella parvula Sp2g00720 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase ch2-1 + View
Solanum pennellii Sopen08g029880 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor (EC 4.6.1.12) (MECPS) (MECDP-synthase) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle), Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The proteins activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype. | isoprenoid F (ISPF) | FUNCTIONS IN: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity | INVOLVED IN: chlorophyll biosynthetic process, carotenoid biosynthetic process, response to light stimulus, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | LOCATED IN: chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core Spenn-ch08 - View
Solanum tuberosum PGSC0003DMG400012185 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic ST4.03ch08 - View
Selenicereus undatus Hund11434 Scaffold_10417 + View
Trochodendron aralioides TAR629G1542 group0 - View
Trochodendron aralioides TAR636G2140 group1 + View
Theobroma cacao Thecc.03G286300 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104809368 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C chloroplastic NW_010965019.1 + View
Tarenaya hassleriana THA.LOC104823600 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase%2C chloroplastic-like NW_010966881.1 - View
Trifolium pratense TPR.G6615 Tp57577_TGAC_v2_LG2 - View
Tripterygium wilfordii TWI81G1086 NC_052251.1 - View
Vaccinium macrocarpon vmacro11408 Similar to ISPF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic (Arabidopsis thaliana OX%3D3702) chr8_Vaccinium_macrocarpon_Stevens_v1 - View
Vitis vinifera GSVIVG01019415001 chr2 - View