Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0005583 PREDICTED: ABC transporter B family member 15-like isoform X1 [Vitis vinifera] Chr1 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG7G7960 LG-7 - View
Aethionema arabicum Aa31LG2G10330 LG-2 - View
Arabidopsis lyrata AL6G25840 scaffold_6 - View
Arabidopsis lyrata AL2G29270 scaffold_2 + View
Arabidopsis lyrata AL3G10910 scaffold_3 - View
Avicennia marina MSTRG.23972 ScioBoG_3895_HRSCAF_3912 + View
Avicennia marina MSTRG.3203 ScioBoG_102835_HRSCAF_103059 - View
Avicennia marina MSTRG.7851 ScioBoG_102841_HRSCAF_103114 + View
Amaranthus hybridus Ah.02g131710 Paired amphipathic helix protein Sin3-like 3 (Histone deacetylase complex subunit Sin3) (AtSin3) (Transcriptional corepressor Sin3) AmaHy_arrow1_Scaffold_2 + View
Aquilegia oxysepala Aqoxy3G03153 CHR03 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TFL5QC K11644 - paired amphipathic helix protein Sin3a (SIN3A) arahy.Tifrunner.gnm1.Arahy.20 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.38NBAQ K11644 - paired amphipathic helix protein Sin3a (SIN3A) arahy.Tifrunner.gnm1.Arahy.10 - View
Arabidopsis thaliana AT5G15020 SIN3-like 2 Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190). SIN3-like 2 (SNL2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194)%2C Paired amphipathic helix (InterPro:IPR003822)%3B BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1)%3B Has 7665 Blast hits to 4944 proteins in 497 species: Archae - 53%3B Bacteria - 740%3B Metazoa - 2798%3B Fungi - 1391%3B Plants - 712%3B Viruses - 253%3B Other Eukaryotes - 1718 (source: NCBI BLink). SIN3-like 2 (SNL2)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194)%2C Paired amphipathic helix (InterPro:IPR003822)%3B BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1). Chr5 - View
Arabidopsis thaliana AT1G59890 SIN3-like 5 SIN3-like 5 (SNL5)%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194)%2C Paired amphipathic helix (InterPro:IPR003822)%3B BEST Arabidopsis thaliana protein match is: SIN3-like 6 (TAIR:AT1G10450.1)%3B Has 2059 Blast hits to 826 proteins in 195 species: Archae - 0%3B Bacteria - 5%3B Metazoa - 811%3B Fungi - 648%3B Plants - 432%3B Viruses - 0%3B Other Eukaryotes - 163 (source: NCBI BLink). Chr1 + View
Arabidopsis thaliana AT1G70030 Paired amphipathic helix (PAH2) superfamily protein Paired amphipathic helix (PAH2) superfamily protein%3B FUNCTIONS IN: molecular_function unknown%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%3B LOCATED IN: nucleus%3B CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822)%3B BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1)%3B Has 1404 Blast hits to 650 proteins in 168 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 539%3B Fungi - 520%3B Plants - 290%3B Viruses - 0%3B Other Eukaryotes - 55 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaC05g26327 ChrC05 - View
Brassica carinata BcaC03g13435 ChrC03 + View
Brassica carinata BcaB03g14781 ChrB03 + View
Brassica carinata BcaB01g05087 ChrB01 + View
Brassica carinata BcaC08g46454 ChrC08 + View
Brassica napus A03p06900 A03 - View
Brassica napus A02p02840 A02 - View
Brassica napus A09p40670 A09 + View
Brassica napus C02p07460 C02 - View
Brassica napus C06p43890 C06 + View
Brassica napus A07p36470 A07 + View
Brassica napus C03p07890 C03 - View
Brassica napus C09p62110 C09 + View
Brassica oleracea BolC2t06677H C2 - View
Brassica oleracea BolC6t39461H C6 + View
Brassica oleracea BolC3t13287H C3 - View
Brassica rapa BraA03t10012Z A03 - View
Capsicum annuum CAN.G206.73 PGAv.1.6.scaffold206 - View
Cicer arietinum L. Ca_04238_v3 Ca_LG2_v3 - View
Corylus avellana Haze_14613 Similar to SNL2: Paired amphipathic helix protein Sin3-like 2 (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc07_g02780 Paired amphipathic helix protein Sin3-like 2 chr7 - View
Coffea canephora Cc11_g13980 Paired amphipathic helix protein Sin3-like 3 chr11 + View
Citrus clementina Ciclev10010908m.g scaffold_6 - View
Carpinus fangiana Cfa007484 Cfa03 - View
Cardamine hirsuta CARHR198270 Paired amphipathic helix protein Sin3-like 1 Chr6 + View
Cardamine hirsuta CARHR024570 Paired amphipathic helix protein Sin3-like 3 Chr1 - View
Cardamine hirsuta CARHR063110 Paired amphipathic helix protein Sin3-like 3 Chr2 + View
Carya illinoinensis CiPaw.03G032900 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Chr03 + View
Carya illinoinensis CiPaw.04G021700 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Chr04 + View
Carya illinoinensis CiPaw.05G144300 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Chr05 + View
Citrullus lanatus ClCG05G024900 Paired amphipathic helix protein Sin3 CG_Chr05 + View
Cucumis melo MELO3C012036.2 Paired amphipathic helix SIN3-like protein chr10 + View
Capsella rubella Carub.0002s1671 KOG4204 - Histone deacetylase complex, SIN3 component scaffold_2 + View
Capsella rubella Carub.0006s1318 K11644 - paired amphipathic helix protein Sin3a (SIN3A) scaffold_6 - View
Cucumis sativus L. CsaV3_5G032000 Paired amphipathic helix protein Sin3-like chr5 - View
Daucus carota DCAR_011183 hypothetical protein DCARv2_Chr3 + View
Davidia involucrata Dinv35005 GWHABJS00000012 + View
Davidia involucrata Dinv13124 GWHABJS00000006 + View
Davidia involucrata Dinv24925 GWHABJS00000018 - View
Davidia involucrata Dinv33684 GWHABJS00000014 - View
Davidia involucrata Dinv31135 GWHABJS00000008 + View
Durio zibethinus Duzib251G0389 NW_019167971.1 + View
Durio zibethinus Duzib264G1131 NW_019167960.1 - View
Durio zibethinus Duzib268G1764 NW_019168270.1 + View
Durio zibethinus Duzib187G0377 NW_019167860.1 - View
Durio zibethinus Duzib248G1530 NW_019168048.1 - View
Erigeron canadensis ECA232G2758 Conyza_canadensis_scaffold:2 + View
Erigeron canadensis ECA234G2364 Conyza_canadensis_scaffold:4 + View
Eucalyptus grandis Eucgr.J02161 Chr10 + View
Eucalyptus grandis Eucgr.I01884 Chr09 - View
Eucalyptus grandis Eucgr.B03381 Chr02 + View
Erythranthe guttata Migut.E00130 scaffold_5 + View
Erythranthe guttata Migut.L01376 scaffold_12 + View
Eutrema salsugineum Thhalv10009361m.g PTHR12346 - SIN3B-RELATED scaffold_5 + View
Eutrema salsugineum Thhalv10019899m.g K11644 - paired amphipathic helix protein Sin3a (SIN3A) scaffold_13 + View
Eutrema salsugineum Thhalv10018014m.g K11644 - paired amphipathic helix protein Sin3a (SIN3A) scaffold_9 - View
Fragaria x ananassa FAN09G1195 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Fvb6-2 - View
Fragaria x ananassa FAN14G4427 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Fvb6-1 - View
Fragaria x ananassa FAN05G2798 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Fvb6-3 - View
Fragaria vesca FvH4_6g49770 PTHR12346//PTHR12346:SF8 - SIN3B-RELATED // PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 1-RELATED Fvb6 + View
Gossypium hirsutum Gohir.A09G023600 PTHR12346:SF8 - PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 1-RELATED A09 + View
Gossypium hirsutum Gohir.D09G022900 PTHR12346:SF8 - PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 1-RELATED D09 + View
Gossypium hirsutum Gohir.D04G052000 K11644 - paired amphipathic helix protein Sin3a (SIN3A) D04 + View
Gossypium hirsutum Gohir.A03G144200 K11644 - paired amphipathic helix protein Sin3a (SIN3A) A03 - View
Gossypium hirsutum Gohir.A05G362400 K11644 - paired amphipathic helix protein Sin3a (SIN3A) A05 - View
Gossypium hirsutum Gohir.D02G167400 K11644 - paired amphipathic helix protein Sin3a (SIN3A) D02 - View
Glycine max Glyma.13G067600 PTHR12346:SF6 - PAIRED AMPHIPATHIC HELIX REPEAT-CONTAINING PROTEIN Gm13 - View
Glycine max Glyma.18G130300 PTHR12346 - SIN3B-RELATED Gm18 + View
Glycine max Glyma.19G016300 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Gm19 - View
Gossypium raimondii Gorai.005G187800 Chr05 - View
Gossypium raimondii Gorai.006G026900 Chr06 + View
Gossypium raimondii Gorai.012G058200 Chr12 + View
Helianthus annuus HanXRQChr09g0265741 Putative histone deacetylase interacting domain; Sin3, C-terminal HanXRQChr09 + View
Helianthus annuus HanXRQChr15g0474281 Probable SIN3-like 2 HanXRQChr15 + View
Lupinus albus Lalb_Chr06g0176551 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Lalb_Chr06 - View
Lupinus albus Lalb_Chr02g0159881 PTHR12346//PTHR12346:SF8 - SIN3B-RELATED // PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 1-RELATED Lalb_Chr02 - View
Lupinus albus Lalb_Chr21g0319171 K11644 - paired amphipathic helix protein Sin3a (SIN3A) Lalb_Chr21 + View
Lotus japonicus Lj2g0021309 K11644 - paired amphipathic helix protein Sin3a (SIN3A) chr2 + View
Lonicera japonica Lju41A28G115 GWHAAZE00000094 + View
Lactuca sativa Lsat_1_v5_gn_4_7801 Lsat_1_v8_lg_4 - View
Lactuca sativa Lsat_1_v5_gn_4_180841 PTHR12346 - SIN3B-RELATED Lsat_1_v8_lg_4 + View
Lactuca sativa Lsat_1_v5_gn_2_90740 Lsat_1_v8_lg_2 + View
Malus domestica MD17G1042600 SIN3-like 2 Chr17 - View
Malus domestica MD13G1084700 SIN3-like 4 Chr13 + View
Malus domestica MD16G1083700 SIN3-like 4 Chr16 + View
Malus domestica MD09G1041300 SIN3-like 2 Chr09 - View
Manihot esculenta Manes.17G117254 Chromosome17 + View
Manihot esculenta Manes.01G194400 Chromosome01 + View
Nelumbo nucifera Nn3g17050 chr3 - View
Nelumbo nucifera Nn4g22953 chr4 - View
Nicotiana tabacum Nitab4.5_0004905g0100 Paired amphipathic helix Nitab4.5_0004905 - View
Olea europaea Oeu060594.1 chr10 - View
Petunia axillaris Peaxi162Scf00129g00728 Paired amphipathic helix protein Sin3-like 2 Peaxi162Scf00129 + View
Punica granatum PGR142G2915 NC_045128.1 - View
Prunus persica Prupe.3G276200 PTHR12346 - SIN3B-RELATED Pp03 + View
Papaver somniferum PSO478G4498 NC_039361.1 - View
Phaseolus vulgaris Phvul.004G022900 Chr04 - View
Quercus lobata QL02p079008 CM012294 - View
Rhododendron simsii Rhsim08G0062900 chr08 - View
Rhododendron simsii Rhsim12G0051100 chr12 + View
Rhododendron simsii Rhsim12G0126800 chr12 - View
Striga asiatica SGA_v2.0_scaffold205G41733 scaffold205 - View
Salvia bowleyana SalBow8G2280 GWHASIU00000004 - View
Sechium edule Sed0017791 LG06 + View
Solanum lycopersicum Solyc02g087360.4 Paired amphipathic helix protein Sin3-like 1 (AHRD V3.3 *** A0A1U8G0F5_CAPAN) SL4.0ch02 - View
Schrenkiella parvula Sp2g04710 K11644 - paired amphipathic helix protein Sin3a (SIN3A) ch2-2 - View
Schrenkiella parvula Sp1g21550 PF02671 - Paired amphipathic helix repeat (PAH) ch1-1 - View
Schrenkiella parvula Sp3g00760 K11644 - paired amphipathic helix protein Sin3a (SIN3A) ch3-1 - View
Schrenkiella parvula Sp6g29020 K11644 - paired amphipathic helix protein Sin3a (SIN3A) ch6-6 + View
Solanum pennellii Sopen05g002490 Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190). | SIN3-like 1 (SNL1) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting , Paired amphipathic helix | BEST Arabidopsis thaliana protein match is: SIN3-like 2 . Spenn-ch05 - View
Solanum pennellii Sopen02g032110 Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190). | SIN3-like 2 (SNL2) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting , Paired amphipathic helix | BEST Arabidopsis thaliana protein match is: SIN3-like 1 ., Histone deacetylase interacting Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400022606 WRKY domain class transcription factor ST4.03ch05 + View
Solanum tuberosum PGSC0003DMG400001399 Paired amphipathic helix protein Sin3-like 2 ST4.03ch02 + View
Selenicereus undatus Hund25301 Scaffold_3410 - View
Trochodendron aralioides TAR371G0714 group13 - View
Theobroma cacao Thecc.04G065500 SIN3-like 2 Chromosome_4 + View
Theobroma cacao Thecc.02G238600 WRKY domain class transcription factor Chromosome_2 + View
Tarenaya hassleriana THA.LOC104805422 paired amphipathic helix protein Sin3-like 2 isoform X1 NW_010961290.1 - View
Tarenaya hassleriana THA.LOC104821055 paired amphipathic helix protein Sin3-like 2 NW_010966372.1 + View
Tripterygium wilfordii TWI18G0523 NC_052241.1 + View
Tripterygium wilfordii TWI12G1163 NC_052243.1 + View
Tripterygium wilfordii TWI75G0044 NC_052253.1 - View
Tripterygium wilfordii TWI56G0743 NC_052242.1 - View
Tripterygium wilfordii TWI36G1084 NC_052237.1 - View
Utricularia gibba unitig_744.g24345 unitig_744 + View
Vaccinium macrocarpon vmacro05781 Similar to SNL2: Paired amphipathic helix protein Sin3-like 2 (Arabidopsis thaliana OX%3D3702) chr12_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro16299 Similar to SNL3: Paired amphipathic helix protein Sin3-like 3 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro01207 Similar to SNL4: Paired amphipathic helix protein Sin3-like 4 (Arabidopsis thaliana OX%3D3702) chr1_Vaccinium_macrocarpon_Stevens_v1 + View
Vitis vinifera GSVIVG01032579001 chr14 + View