Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
CSS0041607 PREDICTED: ribonucleoprotein At2g37220, chloroplastic [Prunus mume] Contig676 - View
CSS0024338 PREDICTED: ribonucleoprotein At2g37220, chloroplastic [Prunus mume] Chr10 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG5G22550 LG-5 - View
Acer truncatum Atru.chr8.1858 chr8 + View
Actinidia chinensis Actinidia31343 Lachesis_group20 + View
Actinidia chinensis Actinidia13083 Lachesis_group0 - View
Arabidopsis lyrata AL4G33590 scaffold_4 - View
Arabidopsis lyrata AL5G34380 scaffold_5 - View
Avicennia marina MSTRG.5748 ScioBoG_102839_HRSCAF_103093 + View
Avicennia marina MSTRG.10310 ScioBoG_13798_HRSCAF_13862 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.145GHR K11294 - nucleolin (NCL, NSR1) arahy.Tifrunner.gnm1.Arahy.02 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.J4YCND K11294 - nucleolin (NCL, NSR1) arahy.Tifrunner.gnm1.Arahy.12 + View
Arabidopsis thaliana AT3G53460 chloroplast RNA-binding protein 29 Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast. chloroplast RNA-binding protein 29 (CP29)%3B FUNCTIONS IN: RNA binding%2C poly(U) RNA binding%3B LOCATED IN: thylakoid%2C chloroplast stroma%2C chloroplast%3B EXPRESSED IN: 25 plant structures%3B EXPRESSED DURING: 16 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1)%3B Has 992946 Blast hits to 485878 proteins in 21699 species: Archae - 20986%3B Bacteria - 587269%3B Metazoa - 197754%3B Fungi - 28530%3B Plants - 64033%3B Viruses - 69323%3B Other Eukaryotes - 25051 (source: NCBI BLink). Chr3 - View
Arabidopsis thaliana AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. RNA-binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C poly(U) RNA binding%3B INVOLVED IN: response to cold%2C response to abscisic acid stimulus%2C innate immune response%3B LOCATED IN: in 6 components%3B EXPRESSED IN: 26 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 (TAIR:AT3G53460.3)%3B Has 997478 Blast hits to 497195 proteins in 22066 species: Archae - 21542%3B Bacteria - 603238%3B Metazoa - 188798%3B Fungi - 28200%3B Plants - 60491%3B Viruses - 70820%3B Other Eukaryotes - 24389 (source: NCBI BLink). Chr2 - View
Amborella trichopoda ATR0048G013 AmTr_v1.0_scaffold00148 + View
Brassica carinata BcaB01g00270 ChrB01 + View
Brassica carinata BcaC02g11843 ChrC02 - View
Brassica carinata BcaC02g07538 ChrC02 + View
Brassica napus C06p21280 C06 - View
Brassica napus A04p06130 A04 + View
Brassica napus A03p20540 A03 - View
Brassica napus C03p24140 C03 - View
Brassica napus A09p46470 A09 - View
Brassica napus C04p39090 C04 + View
Brassica napus C08p28820 C08 - View
Brassica oleracea BolC8t50483H C8 - View
Brassica oleracea BolC4t25483H C4 + View
Brassica oleracea BolC4t28076H C4 - View
Brassica oleracea BolC3t14807H C3 - View
Brassica rapa BraA04t18322Z A04 - View
Brassica rapa BraA03t11297Z A03 - View
Brassica rapa BraA05t19835Z A05 + View
Brassica rapa BraA09t40111Z A09 - View
Brassica rapa BraA04t16316Z A04 + View
Beta vulgaris EL10Ac7g16603 K11294 - nucleolin (NCL, NSR1) Chr7_EL10_PGA_scaffold5 + View
Cannabis sativa CANSAT80G2374 NC_044372.1 - View
Corylus avellana Haze_20582 Similar to CP29B: RNA-binding protein CP29B, chloroplastic (Arabidopsis thaliana OX%3D3702) 10 + View
Citrus clementina Ciclev10012331m.g scaffold_6 + View
Carpinus fangiana Cfa017570 Cfa07 - View
Carya illinoinensis CiPaw.10G133300 K11294 - nucleolin (NCL, NSR1) Chr10 + View
Carya illinoinensis CiPaw.09G175100 K11294 - nucleolin (NCL, NSR1) Chr09 + View
Citrullus lanatus ClCG10G020270 RNA binding protein CG_Chr10 + View
Cucumis melo MELO3C009343.2 29 kDa ribonucleoprotein, chloroplastic chr04 + View
Corchorus olitorius COL.COLO4_26998 hypothetical protein AWUE01019415.1 + View
Chenopodium quinoa AUR62040470 29 kDa ribonucleoprotein B, chloroplastic C_Quinoa_Scaffold_3293 + View
Chenopodium quinoa AUR62039878 CP29B: RNA-binding protein CP29B, chloroplastic C_Quinoa_Scaffold_1594 - View
Capsella rubella Carub.0004s1912 K11294 - nucleolin (NCL, NSR1) scaffold_4 - View
Cucumis sativus L. CsaV3_3G035830 29 kDa ribonucleoprotein, chloroplastic chr3 - View
Daucus carota DCAR_017699 hypothetical protein DCARv2_Chr5 + View
Daucus carota DCAR_014987 hypothetical protein DCARv2_Chr4 + View
Davidia involucrata Dinv35762 GWHABJS00000015 - View
Davidia involucrata Dinv37292 GWHABJS00000021 + View
Durio zibethinus Duzib128G0972 NW_019168481.1 + View
Durio zibethinus Duzib093G1647 NW_019167937.1 + View
Erigeron canadensis ECA238G1210 Conyza_canadensis_scaffold:6 - View
Eucalyptus grandis Eucgr.K01243 Chr11 - View
Erythranthe guttata Migut.L01683 scaffold_12 - View
Erythranthe guttata Migut.J00538 scaffold_10 - View
Eutrema salsugineum Thhalv10017023m.g KOG0114//KOG0131//KOG0144//KOG4210 - Predicted RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) // Nuclear localization sequence binding protein scaffold_10 - View
Eutrema salsugineum Thhalv10010545m.g KOG0121//KOG0131//KOG0144 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) scaffold_16 + View
Fragaria x ananassa FAN09G0494 K11294 - nucleolin (NCL, NSR1) Fvb6-2 + View
Fragaria vesca FvH4_6g16030 K11294 - nucleolin (NCL, NSR1) Fvb6 - View
Gossypium hirsutum Gohir.A04G073600 K11294 - nucleolin (NCL, NSR1) A04 + View
Gossypium hirsutum Gohir.D04G112600 K11294 - nucleolin (NCL, NSR1) D04 + View
Gossypium hirsutum Gohir.A09G149100 KOG0131 - Splicing factor 3b, subunit 4 A09 + View
Gossypium hirsutum Gohir.D09G145000 KOG0131 - Splicing factor 3b, subunit 4 D09 + View
Glycine max Glyma.13G145200 K11294 - nucleolin (NCL, NSR1) Gm13 + View
Glycine max Glyma.10G058500 K11294 - nucleolin (NCL, NSR1) Gm10 + View
Gossypium raimondii Gorai.009G416900 Chr09 + View
Gossypium raimondii Gorai.006G166300 Chr06 + View
Helianthus annuus HanXRQChr07g0195311 Putative nucleotide-binding alpha-beta plait domain HanXRQChr07 - View
Hydrangea macrophylla Hma1.2p1_0614F.1_g189420 Hma1.2p1_0614F.1 + View
Lupinus albus Lalb_Chr02g0156091 KOG0106//KOG0131//KOG0144 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) Lalb_Chr02 + View
Lupinus albus Lalb_Chr06g0171541 K11294 - nucleolin (NCL, NSR1) Lalb_Chr06 - View
Lupinus albus Lalb_Chr21g0314911 K11294 - nucleolin (NCL, NSR1) Lalb_Chr21 - View
Lotus japonicus Lj5g0003620 KOG0121//KOG0131//KOG0144 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) chr5 + View
Lonicera japonica Lj3A982T39 GWHAAZE00000003 - View
Lonicera japonica Lj2C113G9 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_6_30901 K11294 - nucleolin (NCL, NSR1) Lsat_1_v8_lg_6 + View
Malus domestica MD12G1117600 RNA-binding (RRM/RBD/RNP motifs) family protein Chr12 + View
Malus domestica MD04G1096600 RNA-binding (RRM/RBD/RNP motifs) family protein Chr04 + View
Manihot esculenta Manes.09G067800 Chromosome09 + View
Manihot esculenta Manes.08G008000 Chromosome08 - View
Medicago truncatula Medtr1g064230 RNA-binding (RRM/RBD/RNP motif) family protein chr1 + View
Nelumbo nucifera Nn2g13128 chr2 - View
Nelumbo nucifera Nn2g10828 chr2 - View
Nicotiana tabacum Nitab4.5_0000101g0220 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000101 - View
Nicotiana tabacum Nitab4.5_0002130g0040 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0002130 - View
Nicotiana tabacum Nitab4.5_0000754g0250 RNA recognition motif domain, Nucleotide-binding, alpha-beta plait Nitab4.5_0000754 - View
Olea europaea Oeu045207.1 chr11 - View
Petunia axillaris Peaxi162Scf00123g00068 29 kDa ribonucleoprotein A, chloroplastic Peaxi162Scf00123 - View
Petunia axillaris Peaxi162Scf00488g00813 Phototropic-responsive NPH3 family protein Peaxi162Scf00488 + View
Punica granatum PGR142G4243 NC_045128.1 - View
Prunus persica Prupe.6G235900 K11294 - nucleolin (NCL, NSR1) Pp06 + View
Pisum sativum Psat6g071720 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr6LG2 + View
Papaver somniferum PSO801G0024 NW_020628818.1 + View
Papaver somniferum PSO063G1344 NC_039364.1 - View
Papaver somniferum PSO339G2666 NC_039366.1 - View
Papaver somniferum PSO339G1818 NC_039366.1 + View
Populus trichocarpa Potri.006G127200 K11294 - nucleolin (NCL, NSR1) Chr06 + View
Populus trichocarpa Potri.016G090700 K11294 - nucleolin (NCL, NSR1) Chr16 - View
Phaseolus vulgaris Phvul.007G150700 K11294 - nucleolin (NCL, NSR1) Chr07 + View
Quercus lobata QL07p044273 7 + View
Rosa chinensis RcHm_v2.0_Chr3g0469771 RcHm_v2.0_Chr3 - View
Rhododendron simsii Rhsim04G0146800 chr04 + View
Rhododendron simsii Rhsim05G0180400 chr05 + View
Striga asiatica SGA_v2.0_scaffold452G51825 scaffold452 + View
Striga asiatica SGA_v2.0_scaffold40G15536 scaffold40 + View
Salvia bowleyana SalBow3G4387 GWHASIU00000006 - View
Salvia bowleyana SalBow3G3574 GWHASIU00000006 - View
Salix brachista Sabra16G0096200 GWHAAZH00000016 - View
Salix brachista Sabra06G0100100 GWHAAZH00000006 + View
Simmondsia chinensis Sc20g0005330 GWHAASQ00000020 + View
Sechium edule Sed0024268 LG02 + View
Sechium edule Sed0020514 LG04 - View
Solanum lycopersicum Solyc10g086150.2 RNA-binding protein (AHRD V3.3 *** A0A2U1PI86_ARTAN) SL4.0ch10 - View
Solanum lycopersicum Solyc09g007850.3 RNA-binding protein (AHRD V3.3 *** A0A2U1PI86_ARTAN) SL4.0ch09 - View
Schrenkiella parvula Sp4g19540 K11294 - nucleolin (NCL, NSR1) ch4-6 - View
Solanum pennellii Sopen10g035530 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B) - Nicotiana sylvestris (Wood tobacco), Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, poly(U) RNA binding | INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response | LOCATED IN: in 6 components | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 Spenn-ch10 - View
Solanum pennellii Sopen09g002690 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) - Nicotiana sylvestris (Wood tobacco), Encodes a chloroplast RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. | RNA-binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, poly(U) RNA binding | INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response | LOCATED IN: in 6 components | EXPRESSED IN: 26 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 Spenn-ch09 - View
Solanum tuberosum PGSC0003DMG400021562 Single-stranded DNA binding protein ST4.03ch09 + View
Solanum tuberosum PGSC0003DMG400017584 29 kDa ribonucleoprotein B, chloroplastic ST4.03ch10 + View
Trochodendron aralioides TAR633G1105 group2 + View
Trochodendron aralioides TAR636G3258 group1 - View
Theobroma cacao Thecc.05G061700 RNA-binding family protein Chromosome_5 - View
Tripterygium wilfordii TWI53G1090 NC_052244.1 + View
Tripterygium wilfordii TWI74G0749 NC_052234.1 - View
Tripterygium wilfordii TWI77G0952 NC_052236.1 + View
Vaccinium macrocarpon vmacro08766 Similar to 29 kDa ribonucleoprotein B, chloroplastic (Nicotiana sylvestris OX%3D4096) chr6_Vaccinium_macrocarpon_Stevens_v1 + View
Vaccinium macrocarpon vmacro08713 Similar to 29 kDa ribonucleoprotein B, chloroplastic (Nicotiana sylvestris OX%3D4096) chr6_Vaccinium_macrocarpon_Stevens_v1 - View
Vaccinium macrocarpon vmacro20028 Similar to 29 kDa ribonucleoprotein A, chloroplastic (Nicotiana sylvestris OX%3D4096) chr5_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo0720G0084 CM024071.1 - View
Vitis vinifera GSVIVG01016249001 chr13 + View
Vitis vinifera GSVIVG01025697001 chr8 + View