Gene: AT2G37220

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G37220
  • Transcript Identifier AT2G37220.1
  • Gene Type Coding gene
  • Location Chr2 : 15634980-15636331 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G37220.1
  • uniprot Q9ZUU4

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: response to cold, response to abscisic acid stimulus, innate immune response; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 29 (TAIR:AT3G53460.3); Has 997478 Blast hits to 497195 proteins in 22066 species: Archae - 21542; Bacteria - 603238; Metazoa - 188798; Fungi - 28200; Plants - 60491; Viruses - 70820; Other Eukaryotes - 24389 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1901259
IBA
Gene Ontologychloroplast rRNA processing1
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0009737
IEP
Gene Ontologyresponse to abscisic acid2
GO:0045087
IDA
Gene Ontologyinnate immune response3
GO:0009409
IEP
Gene Ontologyresponse to cold4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IDA, HDA
IBA
Gene OntologymRNA binding1 5 6
GO:0008266
IDA
Gene Ontologypoly(U) RNA binding7

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009534
IDA
GOA Databasechloroplast thylakoid
GO:0009534
HDA
Gene Ontologychloroplast thylakoid8
GO:0009579
IDA
GOA Databasethylakoid
GO:0009579
HDA
Gene Ontologythylakoid9
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast10
GO:0009535
IDA
GOA Databasechloroplast thylakoid membrane
GO:0009535
HDA
IBA
Gene Ontologychloroplast thylakoid membrane1 11
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope12
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma13
GO:0005783
HDA
Gene Ontologyendoplasmic reticulum14
GO:0010319
IDA
Gene Ontologystromule15

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.11.2.1 RNA processing.organelle machinery.plastidial mRNA stabilisation.ribonucleoprotein (CP29)